Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.7e-252 875.5 442 100.0
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.7e-252 875.5 442 100.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 7.3e-208 727.2 448 84.2
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.1e-206 723.4 450 83.1
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 2.6e-205 718.8 450 82.7
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 4.4e-205 718.0 443 84.0
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.1e-203 713.4 457 81.8
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 7.1e-203 710.7 447 82.6
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.6e-202 709.5 443 81.7
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.0e-201 706.8 446 80.9
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.0e-201 705.3 455 81.8
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 6.6e-201 704.1 443 81.7
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.5e-200 703.0 387 91.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.1e-199 699.1 399 87.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 8.1e-199 697.2 454 80.2
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.4e-198 696.4 453 79.5
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.4e-198 695.7 448 80.4
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.0e-197 692.6 462 78.1
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.6e-197 692.2 440 80.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 4.5e-197 691.4 455 78.2
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 5.8e-197 691.0 455 79.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 7.6e-197 690.6 390 87.9
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 9.9e-197 690.3 457 79.2
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.7e-196 689.5 448 79.5
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.2e-196 689.1 464 78.9
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.8e-196 688.3 390 87.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.8e-196 688.3 453 79.7
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.4e-195 686.4 443 79.2
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.9e-195 686.0 440 79.5
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.9e-195 686.0 444 80.2
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 3.2e-195 685.3 443 79.2
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 4.2e-195 684.9 448 79.9
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 5.4e-195 684.5 451 80.0
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 5.4e-195 684.5 440 79.3
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 9.3e-195 683.7 464 78.2
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.1e-194 682.6 387 87.3
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 3.5e-194 681.8 390 87.2
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.5e-194 681.8 396 86.1
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 4.6e-194 681.4 390 86.9
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 6.0e-194 681.0 366 91.5
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 1.0e-193 680.2 444 79.7
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.3e-193 679.9 389 86.6
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.3e-193 679.1 388 87.1
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 3.9e-193 678.3 442 78.5
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 3.9e-193 678.3 409 84.4
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.9e-192 676.0 455 78.7
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.9e-192 676.0 396 85.6
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.9e-192 676.0 446 78.7
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.9e-192 676.0 458 77.1
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 2.5e-192 675.6 387 86.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 3.3e-192 675.2 397 85.6
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 4.3e-192 674.9 446 78.7
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 5.6e-192 674.5 449 78.0
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 5.6e-192 674.5 444 79.3
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 7.4e-192 674.1 450 78.0
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-191 673.3 458 77.1
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.3e-191 673.3 445 78.4
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 1.6e-191 672.9 439 78.4
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 1.6e-191 672.9 439 78.4
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.6e-191 672.9 443 77.9
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 2.8e-191 672.2 395 85.1
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 2.8e-191 672.2 395 84.1
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 3.7e-191 671.8 387 86.6
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 4.8e-191 671.4 451 77.8
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 4.8e-191 671.4 445 78.2
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 6.2e-191 671.0 439 78.6
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 6.2e-191 671.0 451 77.2
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 8.1e-191 670.6 389 85.6
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 8.1e-191 670.6 446 78.0
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.1e-190 670.2 441 78.5
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 1.4e-190 669.8 429 80.2
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.4e-190 669.1 425 79.8
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 3.1e-190 668.7 405 82.2
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 3.1e-190 668.7 439 78.1
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 6.9e-190 667.5 439 78.1
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 4.5e-189 664.8 447 77.6
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 9.9e-189 663.7 447 76.3
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.9e-188 662.1 441 76.2
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.4e-188 660.6 442 76.5
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 8.4e-188 660.6 442 77.1
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.1e-187 660.2 453 77.0
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.5e-187 659.1 442 76.2
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 4.2e-187 658.3 385 83.9
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 4.2e-187 658.3 454 75.6
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 7.1e-187 657.5 384 84.6
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 2.7e-186 655.6 443 77.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 6.0e-186 654.4 381 84.8
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.0e-185 653.7 370 87.8
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.8e-185 652.9 400 81.2
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 1.8e-185 652.9 400 81.0
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 3.0e-185 652.1 400 81.2
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.0e-185 652.1 515 69.5
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.9e-185 651.7 394 83.0
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.9e-184 649.4 400 81.0
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 3.3e-184 648.7 443 75.8
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 7.4e-184 647.5 445 76.2
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 9.6e-184 647.1 382 83.2
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 5.8e-181 637.9 439 74.3
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 7.1e-179 630.9 427 77.5
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 8.7e-177 624.0 385 78.7
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.9e-176 622.9 385 78.4
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 3.7e-175 618.6 448 74.1
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.7e-172 609.8 383 76.5
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.1e-171 607.1 328 91.8
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 2.2e-167 592.8 385 74.3
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.8e-166 589.7 364 77.5
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 3.1e-166 589.0 385 73.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 4.8e-159 565.1 350 80.6
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.1e-158 562.0 391 75.2
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.8e-156 555.4 391 72.1
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.9e-155 553.1 383 71.5
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.4e-153 547.0 425 69.9
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.4e-150 537.0 287 91.6
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 8.8e-145 517.7 504 58.1
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.2e-143 513.1 374 66.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.8e-143 512.7 287 85.4
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 3.6e-138 495.7 410 59.5
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 4.1e-134 482.3 371 69.5
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 9.5e-131 471.1 333 75.1
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 2.1e-130 469.9 336 75.6
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 3.6e-130 469.2 363 63.6
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 8.6e-124 448.0 233 94.0
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.9e-119 432.2 291 74.2
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.1e-113 414.5 441 55.8
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.1e-110 404.4 301 69.1
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.3e-95 354.4 224 75.4
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.2e-86 323.2 256 66.4
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 6.4e-79 298.9 299 49.5
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 8.4e-79 298.5 273 61.2
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.3e-76 291.2 187 71.7
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.0e-71 275.0 246 60.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 8.4e-71 271.9 161 82.6
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.5e-70 270.4 355 44.2
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.0e-52 211.8 139 77.0
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 6.7e-52 209.1 336 41.1
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.1e-49 198.7 184 62.0
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.0e-48 197.6 147 72.1
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.7e-48 195.7 113 80.5
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.5e-30 137.5 83 75.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.5e-30 137.5 83 75.9
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.8e-28 131.3 77 80.5
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.6e-27 127.5 129 57.4
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.6e-27 127.5 129 57.4
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 3.8e-23 113.6 113 54.0
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.2e-22 110.5 73 72.6
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.1e-21 106.3 85 63.5
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.8e-19 99.0 76 68.4
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.3e-10 72.0 37 86.5
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.0e-07 62.4 111 40.5


User provided reference genes

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