Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 0.0e+00 1152.9 597 100.0
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 4.8e-263 911.0 491 95.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.3e-236 823.2 497 82.9
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.5e-235 817.0 491 83.5
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-233 813.5 498 81.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-233 813.1 496 82.1
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.8e-233 812.8 496 82.1
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.8e-233 812.8 498 82.5
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-233 812.0 498 81.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-232 808.1 498 81.9
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.7e-231 805.1 500 80.4
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.4e-224 781.6 497 78.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 7.1e-222 774.2 499 79.0
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-220 770.0 497 78.1
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 7.3e-219 764.2 495 77.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.4e-217 760.0 493 77.1
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.2e-216 756.9 491 76.4
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.4e-216 755.4 493 76.1
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.4e-216 755.4 492 77.4
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 5.8e-216 754.6 484 76.9
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.1e-213 746.1 496 75.8
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 6.0e-213 744.6 492 76.4
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.3e-212 743.4 503 74.0
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 3.0e-212 742.3 502 75.9
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 5.1e-212 741.5 493 76.1
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.6e-212 741.1 497 74.8
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-211 740.3 503 73.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.1e-211 740.3 505 73.7
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.5e-211 740.0 489 76.3
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 3.3e-211 738.8 498 74.9
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 4.3e-211 738.4 486 77.4
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.6e-211 737.3 495 74.3
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 8.1e-210 734.2 488 74.6
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.1e-209 733.8 499 73.5
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.8e-209 733.0 491 74.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.1e-209 732.3 491 74.3
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.0e-209 731.9 488 75.0
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 5.2e-209 731.5 491 74.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.2e-208 730.3 492 73.2
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.6e-208 729.2 486 76.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 3.4e-208 728.8 491 74.7
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.4e-208 728.4 507 73.2
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.8e-208 728.0 505 72.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 9.9e-208 727.2 511 73.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.9e-207 725.7 485 75.9
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 8.4e-207 724.2 492 73.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 8.4e-207 724.2 497 73.8
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-206 723.4 504 72.6
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 2.4e-206 722.6 492 73.8
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.4e-206 722.6 483 74.5
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 7.1e-206 721.1 490 75.7
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.6e-205 719.9 501 73.1
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.1e-205 719.5 529 69.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.7e-204 716.5 497 73.4
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.1e-203 713.8 493 72.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 5.6e-203 711.4 484 74.2
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.3e-203 711.1 492 73.2
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-201 706.8 488 72.7
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.8e-201 706.4 511 70.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.3e-201 704.9 492 72.8
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 6.9e-201 704.5 497 72.2
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 6.9e-201 704.5 497 72.2
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 9.0e-201 704.1 492 71.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 9.0e-201 704.1 492 71.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 9.0e-201 704.1 482 73.9
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-200 703.7 492 71.7
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.5e-200 703.4 491 72.3
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.5e-200 703.4 503 72.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.4e-200 702.2 492 72.0
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.4e-200 702.2 491 72.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.5e-200 701.8 492 72.0
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.5e-200 701.8 492 72.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 7.6e-200 701.0 492 72.4
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-199 699.9 490 72.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-199 699.9 502 70.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-199 699.9 492 72.4
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.2e-199 699.5 494 71.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.2e-199 699.5 492 72.4
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.9e-199 698.4 492 71.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.9e-199 698.4 491 71.9
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.9e-199 698.4 492 72.4
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.4e-198 696.0 487 72.1
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 3.2e-198 695.7 492 72.0
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.2e-198 695.3 505 70.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 5.4e-198 694.9 496 71.8
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.2e-197 693.7 489 71.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.2e-197 693.7 489 71.4
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 3.5e-197 692.2 493 71.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.5e-197 692.2 486 72.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.8e-196 689.9 495 71.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.0e-196 689.1 490 71.0
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 6.7e-196 688.0 476 73.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-195 687.2 504 69.6
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.9e-195 686.4 492 69.1
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 7.4e-195 684.5 488 70.1
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.4e-195 684.5 494 70.6
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.8e-193 679.9 483 71.4
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 4.0e-193 678.7 524 67.7
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 6.9e-193 677.9 481 73.4
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 7.6e-192 674.5 499 69.1
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.8e-191 672.2 480 70.2
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-189 666.4 481 73.2
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.7e-189 666.0 523 67.5
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.5e-189 665.6 490 70.8
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 2.3e-188 662.9 456 72.6
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 6.7e-188 661.4 490 69.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 8.7e-188 661.0 493 66.5
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.4e-185 652.9 494 68.6
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 5.3e-185 651.7 567 61.9
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.3e-185 651.7 486 68.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.2e-183 646.4 580 59.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.8e-183 645.6 494 66.8
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 9.3e-182 641.0 498 64.5
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 5.1e-180 635.2 470 69.1
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 5.1e-180 635.2 501 64.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.9e-179 633.3 530 63.8
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.6e-178 630.2 501 64.3
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 9.0e-177 624.4 492 63.4
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.7e-175 620.2 495 66.3
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.7e-175 620.2 487 67.4
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.2e-174 615.9 504 61.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.2e-174 614.8 402 75.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.8e-172 610.1 489 63.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.1e-165 585.1 504 63.5
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.3e-164 583.2 492 60.2
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-162 576.2 402 75.1
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-160 570.1 347 82.7
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.5e-158 563.1 358 79.9
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 6.1e-157 558.5 381 74.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 5.2e-156 555.4 457 61.7
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.8e-153 547.0 507 56.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 1.6e-149 533.9 553 54.4
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 4.0e-148 529.3 472 58.1
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 5.7e-147 525.4 401 66.3
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.2e-146 523.5 394 69.0
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 3.0e-140 503.1 353 71.7
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-139 499.2 410 66.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.7e-138 496.1 358 70.9
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-134 483.0 280 85.0
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.0e-131 473.8 363 68.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.3e-127 460.3 467 53.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.4e-123 446.4 272 83.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.1e-117 427.2 275 76.7
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.8e-116 424.1 306 70.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.3e-111 407.1 338 63.6
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.5e-91 341.3 233 72.1
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-80 305.1 184 81.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.3e-79 300.8 252 64.7
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-78 297.7 191 78.5
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.1e-73 282.0 206 71.4
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.6e-72 278.1 478 36.8
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.6e-69 268.1 200 66.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 5.3e-60 236.5 227 57.7
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 9.4e-57 225.7 146 78.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.1e-54 218.8 138 76.1
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 5.7e-54 216.5 254 49.2
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 2.4e-52 211.1 134 77.6
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 4.7e-48 196.8 263 48.7
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.0e-47 195.7 153 65.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.5e-43 180.3 114 73.7
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.0e-42 176.8 133 66.2
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.0e-39 167.5 126 68.3
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.7e-37 161.8 114 67.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 5.3e-36 156.8 209 44.0
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.2e-30 139.0 97 68.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.2e-30 139.0 97 68.0
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.7e-24 117.9 63 90.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 3.6e-24 117.5 92 67.4
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 6.1e-24 116.7 102 58.8
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 6.1e-24 116.7 67 80.6
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.5e-22 112.1 69 78.3
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.8e-21 107.8 74 70.3
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.8e-21 107.8 65 87.7
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.3e-21 106.3 65 78.5
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 8.3e-21 106.3 67 77.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.0e-20 103.2 65 75.4
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.0e-19 101.7 65 73.8
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.0e-18 99.4 186 40.9
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.5e-17 93.6 77 63.6
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.1e-12 77.4 46 73.9
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 8.6e-10 69.7 38 78.9
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 1.4e-07 62.4 32 96.9
arahy.Tifrunner.gnm1.ann1.411P2H Arachis hypogaea HOM05D001273 ORTHO05D000023 5.8e-06 57.0 101 42.6
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 7.5e-06 56.6 48 72.9
Zm00001eb170120 Zea mays HOM05D000137 ORTHO05D014725 7.5e-06 56.6 45 57.8
Zm00001eb388940 Zea mays HOM05D004043 ORTHO05D002193 7.5e-06 56.6 45 57.8


User provided reference genes

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