Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.8e-152 542.0 284 100.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.2e-140 501.9 283 92.9
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 3.9e-85 318.9 228 73.7
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 7.3e-84 314.7 228 73.7
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.8e-82 310.1 287 63.4
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.6e-81 306.2 173 87.3
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 3.4e-81 305.8 225 72.0
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 4.4e-81 305.4 226 73.0
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 5.8e-81 305.1 173 87.3
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.9e-80 302.8 220 72.3
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 4.9e-80 302.0 214 73.4
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 8.3e-80 301.2 210 74.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.2e-79 299.3 287 62.7
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 9.2e-79 297.7 214 70.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.6e-78 297.0 240 64.6
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 2.7e-78 296.2 223 67.7
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 4.6e-78 295.4 222 66.7
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 7.8e-78 294.7 247 60.7
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 7.8e-78 294.7 244 63.9
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 2.3e-77 293.1 230 67.0
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.3e-77 293.1 204 72.1
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.3e-77 293.1 204 72.1
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 8.6e-77 291.2 216 69.0
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.3e-76 289.3 209 68.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.3e-76 289.3 204 71.1
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 5.6e-76 288.5 206 68.9
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.6e-76 288.5 216 69.0
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.6e-76 288.5 222 68.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.2e-75 287.3 211 69.2
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.2e-75 287.3 243 61.7
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.6e-75 287.0 204 70.1
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.1e-75 286.6 168 81.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.8e-75 286.2 203 70.4
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.8e-75 286.2 222 67.1
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.7e-75 285.4 211 68.2
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 6.2e-75 285.0 209 67.5
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.2e-75 285.0 224 67.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 6.2e-75 285.0 223 65.9
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.1e-74 284.3 229 66.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.1e-74 284.3 226 63.3
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.8e-74 283.5 167 82.6
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.3e-74 283.1 205 68.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.2e-74 282.0 216 66.7
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.2e-74 282.0 216 66.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 5.2e-74 282.0 216 66.7
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 8.9e-74 281.2 210 66.2
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 8.9e-74 281.2 205 68.8
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.5e-73 280.4 204 68.6
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 2.0e-73 280.0 206 67.5
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.0e-73 280.0 206 67.5
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 5.8e-73 278.5 205 66.3
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 5.8e-73 278.5 207 66.2
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 5.8e-73 278.5 204 68.6
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 7.6e-73 278.1 244 61.1
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.3e-72 277.3 207 65.2
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.3e-72 277.3 207 65.7
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.3e-72 277.3 168 76.8
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.7e-72 276.9 167 76.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.9e-72 276.2 207 66.2
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 2.9e-72 276.2 207 65.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.7e-72 275.8 203 68.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 3.7e-72 275.8 203 68.0
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 3.7e-72 275.8 241 60.2
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 4.9e-72 275.4 203 67.5
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 4.9e-72 275.4 167 74.9
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 6.4e-72 275.0 222 66.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 6.4e-72 275.0 167 77.8
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 6.4e-72 275.0 227 61.2
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 8.4e-72 274.6 242 59.5
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 8.4e-72 274.6 211 66.4
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.4e-71 273.9 211 65.4
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.4e-71 273.9 213 65.7
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.4e-71 273.9 230 60.4
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.9e-71 273.5 207 66.2
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 3.2e-71 272.7 207 64.7
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 4.1e-71 272.3 239 59.4
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.4e-71 271.9 205 64.9
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 7.1e-71 271.6 249 57.8
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 7.1e-71 271.6 171 75.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.6e-70 270.4 203 65.5
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.6e-70 270.4 167 74.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.6e-70 270.4 167 74.3
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.7e-70 269.6 215 62.3
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.3e-69 267.3 295 51.5
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.7e-69 266.9 211 64.0
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.3e-69 266.5 279 52.7
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 3.0e-69 266.2 203 67.0
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.9e-69 265.8 205 65.9
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 8.6e-69 264.6 222 62.6
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.5e-68 263.8 213 63.4
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-68 263.8 213 63.4
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-68 263.8 213 63.4
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 4.3e-68 262.3 225 60.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 4.3e-68 262.3 169 75.1
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.3e-68 262.3 213 62.9
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 5.6e-68 261.9 167 70.7
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 5.6e-68 261.9 182 69.2
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.2e-67 260.8 169 75.1
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.2e-67 260.8 212 60.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.6e-67 260.4 218 62.8
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.6e-67 259.2 213 64.3
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.4e-66 257.3 205 63.4
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 4.4e-65 252.3 167 71.3
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 7.6e-65 251.5 208 65.9
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 9.9e-65 251.1 168 73.2
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.9e-64 248.8 237 56.5
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.1e-63 247.7 166 67.5
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.2e-63 245.7 184 66.8
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.1e-62 243.4 207 60.9
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 3.6e-59 232.6 160 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.5e-57 227.3 179 63.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.9e-55 220.3 163 64.4
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 9.3e-55 218.0 160 66.2
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.7e-54 216.5 133 75.2
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.9e-53 212.6 155 69.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.5e-52 210.7 131 77.1
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.5e-52 209.9 224 57.1
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 4.0e-50 202.6 169 56.8
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 9.9e-49 198.0 155 66.5
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 4.9e-48 195.7 180 54.4
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 6.4e-48 195.3 117 76.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.6e-46 190.7 148 64.2
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.3e-44 183.0 108 75.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 9.0e-42 174.9 116 69.0
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.6e-38 164.1 92 82.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-34 151.0 248 39.1
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.3e-31 138.3 242 41.7
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.2e-30 137.9 94 63.8
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 4.3e-28 129.4 133 47.4
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 8.2e-27 125.2 166 41.0
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 6.9e-26 122.1 133 44.4
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 4.5e-25 119.4 116 56.9
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.2e-22 111.3 77 64.9
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.8e-21 107.5 96 62.5
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.8e-21 107.5 96 62.5
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 4.3e-20 102.8 63 81.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.1e-18 98.2 58 79.3
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 5.9e-17 92.4 96 56.2
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-15 87.4 194 37.6
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.8e-11 73.6 43 76.7
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 2.6e-09 67.0 52 63.5
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.8e-08 63.2 56 62.5
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.2e-06 58.2 94 46.8


User provided reference genes

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