Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 8.3e-205 716.8 371 100.0
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.4e-198 694.9 373 97.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 3.2e-124 449.1 374 64.7
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 4.7e-123 445.3 374 63.4
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 2.7e-118 429.5 351 63.2
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 2.3e-114 416.4 347 63.1
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 2.9e-109 399.4 344 60.2
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.9e-108 396.7 346 59.5
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 2.5e-108 396.4 344 59.6
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 5.5e-108 395.2 342 61.1
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 5.5e-108 395.2 343 57.7
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 4.9e-104 382.1 347 57.6
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 5.4e-103 378.6 343 57.1
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 2.7e-102 376.3 343 56.3
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 2.9e-101 372.9 343 56.0
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.1e-100 370.9 345 54.8
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 9.5e-100 367.9 344 57.0
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-98 364.4 347 54.5
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 4.0e-98 362.5 344 56.1
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 1.2e-97 360.9 344 54.4
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 5.7e-97 358.6 346 57.2
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.7e-96 357.1 347 53.0
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.2e-96 356.7 343 54.5
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 2.9e-96 356.3 343 56.0
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 8.3e-96 354.8 345 53.0
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 8.3e-96 354.8 345 53.0
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 8.3e-96 354.8 345 53.0
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 8.3e-96 354.8 345 53.0
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.3e-93 347.4 344 54.7
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 4.3e-92 342.4 366 51.4
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.7e-91 339.0 344 54.1
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 6.2e-91 338.6 343 52.5
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 8.9e-90 334.7 360 50.6
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.2e-89 334.3 345 52.8
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 4.4e-89 332.4 343 51.0
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.3e-88 330.9 368 49.2
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 8.3e-88 328.2 345 52.5
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.0e-86 323.6 346 51.4
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 3.5e-86 322.8 343 51.3
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 7.8e-86 321.6 370 50.3
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 8.6e-85 318.2 368 48.4
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 7.3e-84 315.1 370 50.0
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 9.5e-84 314.7 343 49.3
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 3.6e-83 312.8 374 47.9
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 3.6e-83 312.8 346 49.7
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 1.4e-82 310.8 321 51.1
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.8e-82 310.5 323 49.5
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.2e-81 307.8 336 50.3
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 4.4e-81 305.8 343 47.2
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 5.8e-81 305.4 323 48.9
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 7.5e-81 305.1 347 48.1
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 6.4e-80 302.0 346 48.0
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 8.3e-80 301.6 343 46.9
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.9e-79 300.4 343 46.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 7.1e-79 298.5 343 46.1
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.2e-78 297.7 343 50.1
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.6e-78 297.4 327 49.2
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.1e-78 297.0 343 48.1
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.5e-76 290.8 341 45.7
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 3.6e-75 286.2 344 45.6
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 3.6e-75 286.2 345 47.8
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 4.7e-75 285.8 326 47.9
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 3.1e-74 283.1 344 45.3
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 5.2e-74 282.3 314 49.7
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 1.2e-73 281.2 345 45.2
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 1.7e-72 277.3 344 47.4
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 3.8e-72 276.2 346 47.1
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.7e-70 270.0 346 41.6
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 6.0e-70 268.9 349 43.8
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.3e-69 267.7 345 44.1
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.3e-69 266.9 346 42.2
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 1.5e-68 264.2 347 42.4
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.5e-68 264.2 321 44.2
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.5e-68 264.2 349 44.1
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 4.7e-67 259.2 330 41.8
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 4.7e-67 259.2 330 41.8
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 4.7e-67 259.2 330 41.8
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.8e-66 257.3 343 43.7
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 2.4e-66 256.9 326 44.8
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.6e-65 253.4 343 42.0
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 7.6e-65 251.9 247 55.5
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.2e-64 250.4 333 40.8
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 2.2e-64 250.4 333 40.8
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.8e-64 249.6 333 39.9
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 2.4e-63 246.9 310 44.8
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.2e-62 244.6 315 44.8
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 3.5e-62 243.0 345 41.4
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 7.8e-62 241.9 287 47.0
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 3.0e-61 240.0 346 44.5
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.5e-60 237.7 334 41.6
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.9e-60 237.3 346 41.0
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 8.1e-59 231.9 347 36.6
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.2e-57 228.0 324 42.6
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.7e-54 216.9 343 39.9
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.0e-53 213.4 208 50.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 8.7e-53 211.8 286 42.7
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 3.6e-51 206.5 317 40.4
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.1e-50 204.9 284 41.9
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 4.0e-50 203.0 349 37.8
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.0e-49 200.7 346 34.7
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.4e-47 193.7 344 38.1
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 6.7e-45 185.7 258 39.5
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 3.8e-40 169.9 334 32.9
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 6.5e-40 169.1 245 41.2
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 1.2e-38 164.9 328 36.6
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.7e-38 163.7 327 35.8
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 6.0e-38 162.5 323 35.3
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.1e-35 154.1 155 52.3
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 7.2e-31 139.0 295 29.5
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 2.1e-30 137.5 131 50.4
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.0e-29 133.7 179 43.0
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 5.1e-29 132.9 220 36.8
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 4.3e-28 129.8 219 36.1
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 4.8e-27 126.3 145 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 2.0e-25 120.9 273 27.8
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.1e-23 115.2 92 55.4
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 2.0e-20 104.4 84 56.0
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 6.5e-16 89.4 129 38.8
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 8.5e-16 89.0 109 40.4
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 8.5e-16 89.0 109 40.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 2.5e-15 87.4 108 40.7
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 7.2e-15 85.9 108 38.9
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 7.2e-15 85.9 109 38.5
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 7.2e-15 85.9 108 38.9
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 2.7e-14 84.0 108 40.7
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.0e-13 80.5 117 38.5
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 5.2e-13 79.7 61 59.0
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 2.6e-12 77.4 116 37.1
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-12 77.4 116 37.1
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 9.7e-12 75.5 97 39.2
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-10 72.0 93 39.8
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-09 67.4 146 27.4
Glyma.19G163100 Glycine max HOM05D005574 ORTHO05D214454 8.5e-08 62.4 45 64.4
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 1.2e-06 58.5 74 40.5


User provided reference genes

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