Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PTA25Z Arachis hypogaea HOM05D003720 ORTHO05D005312 1.1e-90 336.7 174 100.0
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 5.1e-80 301.2 202 81.2
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 2.8e-78 295.4 202 80.2
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 1.0e-75 287.0 202 76.7
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 1.3e-75 286.6 202 76.7
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 1.7e-75 286.2 202 76.7
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 4.9e-75 284.6 202 75.7
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 8.4e-75 283.9 202 75.7
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 8.4e-75 283.9 202 76.2
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.9e-74 282.7 202 75.2
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 4.2e-74 281.6 202 75.2
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 7.1e-74 280.8 202 74.8
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 1.6e-73 279.6 202 74.8
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 3.0e-72 275.4 202 73.8
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 6.7e-72 274.2 203 73.9
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 8.7e-72 273.9 203 72.4
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 8.7e-72 273.9 203 74.4
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 1.1e-71 273.5 203 74.4
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 1.1e-71 273.5 203 73.9
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.1e-71 273.5 203 73.9
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.1e-71 273.5 203 73.9
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 2.5e-71 272.3 203 73.9
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 3.3e-71 271.9 203 72.9
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 3.3e-71 271.9 203 72.9
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.3e-71 271.9 203 73.4
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 3.3e-71 271.9 203 73.4
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 5.7e-71 271.2 203 73.4
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 7.4e-71 270.8 203 73.4
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.3e-70 270.0 203 73.4
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.3e-70 270.0 203 73.4
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 2.8e-70 268.9 203 72.4
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.8e-70 268.9 202 71.3
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.8e-70 268.9 203 72.4
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 3.7e-70 268.5 205 73.2
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 3.7e-70 268.5 203 72.4
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 6.3e-70 267.7 203 72.9
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 8.2e-70 267.3 203 71.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 1.1e-69 266.9 203 71.4
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.1e-69 266.9 203 72.9
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 1.1e-69 266.9 203 72.4
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 1.4e-69 266.5 203 71.4
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 2.4e-69 265.8 203 71.4
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 3.1e-69 265.4 203 71.4
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 3.1e-69 265.4 203 70.9
Cpa.g.sc23.154 Carica papaya HOM05D003720 ORTHO05D005312 4.1e-69 265.0 203 71.9
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 4.1e-69 265.0 203 70.4
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 5.3e-69 264.6 203 71.4
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 9.0e-69 263.8 203 71.9
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 9.0e-69 263.8 203 70.4
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.2e-68 263.5 203 71.4
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 2.0e-68 262.7 203 70.0
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 2.0e-68 262.7 203 70.4
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 3.4e-68 261.9 203 70.4
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 4.5e-68 261.5 203 70.4
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 5.9e-68 261.2 203 70.0
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 5.9e-68 261.2 203 70.9
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 5.9e-68 261.2 203 70.9
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 7.6e-68 260.8 203 71.4
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 7.6e-68 260.8 203 71.4
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 7.6e-68 260.8 203 70.4
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 1.3e-67 260.0 203 69.0
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 1.3e-67 260.0 203 69.0
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.7e-67 259.6 203 69.0
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.2e-67 259.2 203 71.4
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 2.2e-67 259.2 203 70.9
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 3.8e-67 258.5 203 69.0
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 3.8e-67 258.5 203 68.5
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 6.5e-67 257.7 203 69.0
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 8.5e-67 257.3 203 69.5
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 8.5e-67 257.3 203 69.0
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 1.4e-66 256.5 203 71.4
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 2.5e-66 255.8 203 68.5
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 3.2e-66 255.4 203 69.0
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 4.2e-66 255.0 203 68.0
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 4.2e-66 255.0 203 69.0
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 7.2e-66 254.2 203 66.0
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 2.7e-65 252.3 203 67.5
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 4.6e-65 251.5 203 67.5
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 4.6e-65 251.5 203 69.0
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 7.9e-65 250.8 203 67.5
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 1.3e-64 250.0 203 67.5
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 1.3e-64 250.0 203 68.5
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.8e-64 249.6 203 67.5
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 2.3e-64 249.2 203 66.0
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 3.0e-64 248.8 203 68.5
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 8.7e-64 247.3 203 67.5
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 3.3e-63 245.4 203 66.0
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 4.3e-63 245.0 203 67.0
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 9.7e-63 243.8 203 66.5
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 1.3e-62 243.4 203 66.0
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 1.3e-62 243.4 203 66.0
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 1.3e-62 243.4 203 66.0
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.7e-62 243.0 203 66.0
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 1.7e-62 243.0 203 66.0
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 1.7e-62 243.0 203 66.0
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 1.7e-62 243.0 203 67.0
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 2.8e-62 242.3 203 66.5
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 2.8e-62 242.3 203 65.5
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 2.8e-62 242.3 203 66.0
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 3.7e-62 241.9 203 66.0
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 8.2e-62 240.7 203 65.5
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 1.2e-60 236.9 203 66.0
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 3.9e-56 221.9 203 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 4.8e-54 214.9 203 57.1
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 4.1e-53 211.8 202 58.4
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 3.4e-52 208.8 195 60.5
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.4e-50 203.4 202 54.5
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 7.2e-50 201.1 202 55.0
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 2.2e-46 189.5 203 51.7
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.5e-42 176.8 175 59.4
arahy.Tifrunner.gnm1.ann1.7C8SEE Arachis hypogaea HOM05D003720 ORTHO05D005312 4.2e-42 175.3 174 60.3
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 5.7e-39 164.9 202 51.5
FvH4_1g04984 Fragaria vesca HOM05D003720 ORTHO05D005312 7.5e-31 137.9 136 58.1
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 1.6e-17 93.6 85 62.4
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 5.8e-15 85.1 47 83.0


User provided reference genes

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