Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.8e-249 864.4 435 100.0
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 3.2e-200 701.8 437 79.4
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.5e-200 701.0 437 79.6
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.0e-183 644.0 435 72.4
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.7e-177 626.3 422 72.0
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.5e-176 623.2 435 70.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.5e-176 622.5 427 72.8
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 6.2e-175 617.8 436 69.7
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.2e-173 613.6 435 70.3
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.3e-169 599.4 403 72.0
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 5.1e-169 598.2 422 67.8
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 6.6e-169 597.8 405 71.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 8.6e-169 597.4 424 68.4
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.1e-168 597.0 401 70.8
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.5e-168 594.0 425 68.7
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.7e-167 591.7 428 68.2
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.8e-166 589.7 423 67.6
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 5.2e-166 588.2 468 64.1
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.5e-165 586.6 435 66.9
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.0e-165 586.3 417 68.6
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 7.5e-165 584.3 417 68.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-164 583.6 438 65.8
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.7e-164 583.2 431 66.1
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.9e-164 582.4 435 66.9
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.7e-164 582.0 401 69.3
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.7e-164 582.0 424 66.7
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 6.4e-164 581.3 402 70.4
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 6.4e-164 581.3 423 67.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-163 580.5 431 65.9
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.9e-163 579.7 401 69.1
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.9e-163 579.7 424 66.0
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 5.4e-163 578.2 420 67.6
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 9.2e-163 577.4 402 67.9
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.7e-162 575.9 424 66.7
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.5e-162 575.5 404 67.6
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 7.8e-162 574.3 401 68.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.0e-161 573.9 408 67.2
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.3e-161 573.5 401 70.1
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.3e-161 572.8 404 68.3
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 2.3e-161 572.8 422 66.8
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.3e-161 572.8 417 66.9
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.0e-161 572.4 422 65.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 3.9e-161 572.0 404 68.1
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 8.6e-161 570.9 422 65.4
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.1e-160 570.5 401 68.1
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 4.3e-160 568.5 422 65.2
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 7.3e-160 567.8 435 65.1
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 6.2e-159 564.7 416 67.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.8e-158 563.1 423 65.2
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.8e-158 563.1 393 68.7
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.4e-158 562.8 409 66.5
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.1e-158 562.4 401 66.8
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 5.2e-158 561.6 401 67.6
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.3e-156 557.0 399 66.2
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.7e-156 556.6 401 66.1
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.2e-156 556.2 399 66.4
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 2.9e-156 555.8 401 67.6
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.9e-156 555.8 404 65.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.8e-156 555.4 404 66.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 6.4e-156 554.7 412 64.6
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 8.4e-156 554.3 401 67.3
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.4e-155 553.5 393 67.9
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.4e-155 553.5 428 63.8
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 2.4e-155 552.7 419 64.0
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.4e-155 552.7 399 65.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.4e-155 552.7 399 65.9
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 3.2e-155 552.4 399 66.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 5.4e-155 551.6 404 66.8
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 5.4e-155 551.6 404 66.8
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 5.4e-155 551.6 463 60.7
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 7.1e-155 551.2 390 70.0
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 2.1e-154 549.7 423 61.7
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.5e-154 548.9 428 63.3
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.0e-153 547.4 393 65.9
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.7e-153 546.6 398 64.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 3.9e-153 545.4 430 63.5
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 3.3e-152 542.3 392 67.3
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.6e-151 538.9 397 65.7
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 9.0e-150 534.3 395 64.1
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.6e-149 531.2 400 63.0
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.1e-147 527.3 424 62.3
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.1e-147 527.3 437 60.6
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 7.8e-146 521.2 423 60.5
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 3.1e-142 509.2 378 66.4
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 9.0e-142 507.7 388 61.6
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.2e-141 507.3 396 62.9
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 9.9e-141 504.2 572 49.1
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.4e-139 499.6 399 60.9
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 5.4e-139 498.4 391 64.5
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-138 497.3 392 63.5
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.0e-137 494.2 442 57.2
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.5e-136 490.3 364 64.8
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 2.9e-132 476.1 418 57.2
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.1e-131 474.2 396 56.6
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.9e-131 473.4 332 68.4
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.3e-129 467.2 346 65.3
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.0e-129 466.1 385 57.9
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.7e-129 464.9 395 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.5e-128 463.0 402 54.7
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 5.8e-125 451.8 345 61.2
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.8e-124 449.1 340 66.2
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 8.4e-124 448.0 399 56.1
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.9e-116 422.9 335 61.2
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.6e-114 415.6 263 84.4
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 7.4e-112 408.3 397 53.4
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.2e-111 404.8 299 65.9
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.4e-107 394.0 377 51.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 2.8e-103 379.8 325 59.4
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.9e-100 369.8 281 65.8
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 9.7e-96 354.8 265 64.9
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-93 347.8 170 100.0
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 4.5e-93 345.9 278 61.9
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.8e-89 334.0 320 52.2
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 5.7e-88 328.9 417 41.5
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 1.8e-86 323.9 324 52.8
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 7.7e-85 318.5 385 44.4
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.9e-84 316.6 229 67.2
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.4e-78 297.7 399 40.1
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.3e-76 290.4 182 80.2
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.1e-57 226.9 263 46.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 6.0e-53 212.6 160 63.8
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.1e-50 202.2 340 34.7
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.9e-46 191.0 129 68.2
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 8.6e-44 182.2 122 69.7
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-41 172.6 174 50.0
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 5.1e-36 156.4 143 61.5
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.6e-32 144.1 141 52.5
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.3e-28 131.0 420 29.8
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.7e-23 114.8 76 76.3
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.2e-23 114.4 95 56.8
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 4.6e-21 106.7 83 55.4
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.9e-15 86.7 71 62.0
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.4e-15 85.9 62 59.7
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.1e-14 82.8 62 62.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.8e-12 78.2 68 57.4
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 3.1e-09 67.4 54 51.9
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.0e-08 64.7 45 66.7
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 5.9e-08 63.2 51 56.9


User provided reference genes

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