Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 3.4e-96 355.1 201 100.0
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 5.5e-70 268.1 190 86.3
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 2.0e-48 196.4 174 64.9
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 5.0e-47 191.8 187 62.0
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 6.6e-47 191.4 177 65.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 6.6e-47 191.4 176 66.5
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 9.5e-46 187.6 147 71.4
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.8e-44 183.3 161 64.6
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.7e-42 176.8 147 67.3
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.9e-42 176.0 147 68.0
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 8.3e-42 174.5 174 63.8
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.1e-41 174.1 147 70.1
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 3.2e-41 172.6 176 61.4
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 9.2e-41 171.0 148 68.9
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 2.1e-40 169.9 174 58.0
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.0e-40 168.3 163 64.4
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.0e-39 167.5 149 67.8
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.3e-39 166.4 165 58.8
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 3.0e-39 166.0 172 62.2
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 6.6e-39 164.9 152 66.4
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.1e-38 164.1 183 54.1
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.1e-38 164.1 173 61.8
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 4.3e-38 162.2 162 63.0
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 5.6e-38 161.8 174 57.5
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 7.3e-38 161.4 175 57.7
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.2e-37 160.6 173 60.7
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.1e-37 159.8 190 50.0
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.1e-37 159.8 168 59.5
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.8e-37 159.5 174 56.3
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 2.8e-37 159.5 159 61.6
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 8.1e-37 157.9 185 52.4
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 8.1e-37 157.9 166 60.8
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 1.8e-36 156.8 186 54.3
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.3e-36 156.4 159 61.0
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 2.3e-36 156.4 166 57.8
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.3e-36 156.4 184 55.4
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 3.1e-36 156.0 168 59.5
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 6.8e-36 154.8 181 55.8
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 1.2e-35 154.1 148 64.9
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.0e-35 153.3 183 53.6
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.6e-35 152.9 188 54.8
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 2.6e-35 152.9 150 63.3
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 2.6e-35 152.9 162 56.8
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.6e-35 152.9 158 58.2
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 3.4e-35 152.5 147 63.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.4e-35 152.1 174 55.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 4.4e-35 152.1 161 57.1
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 9.9e-35 151.0 184 54.3
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 9.9e-35 151.0 187 52.4
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 9.9e-35 151.0 168 55.4
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.3e-34 150.6 175 52.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 2.9e-34 149.4 184 49.5
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 3.7e-34 149.1 187 50.3
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 6.4e-34 148.3 157 54.8
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.3e-34 147.9 184 54.3
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 8.3e-34 147.9 168 55.4
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-33 147.5 165 54.5
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.1e-33 147.5 162 56.2
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.4e-33 147.1 173 51.4
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.4e-33 146.4 188 47.9
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 3.2e-33 146.0 167 56.9
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 4.1e-33 145.6 182 52.2
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 5.4e-33 145.2 176 54.5
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 7.1e-33 144.8 184 53.3
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.7e-32 142.9 181 53.0
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 2.7e-32 142.9 158 59.5
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 2.7e-32 142.9 174 50.0
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 2.7e-32 142.9 173 59.0
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 4.6e-32 142.1 183 51.4
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 4.6e-32 142.1 166 53.6
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 6.0e-32 141.7 196 49.5
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 6.0e-32 141.7 185 51.9
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.8e-32 141.4 168 53.6
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.3e-31 140.6 189 51.9
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 1.7e-31 140.2 184 52.2
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 1.7e-31 140.2 138 61.6
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 1.7e-31 140.2 188 50.5
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.1e-30 137.5 152 56.6
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.1e-30 137.5 159 52.2
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.1e-30 137.5 189 51.3
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.5e-30 137.1 186 47.8
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-30 137.1 189 49.7
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 1.9e-30 136.7 203 47.3
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.9e-30 136.7 155 56.8
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.5e-30 136.3 170 52.9
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 3.3e-30 136.0 163 52.1
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 5.6e-30 135.2 160 53.1
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 7.3e-30 134.8 154 54.5
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 9.5e-30 134.4 118 65.3
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.2e-29 134.0 157 52.9
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-29 133.7 159 55.3
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.8e-29 132.9 156 53.2
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 2.8e-29 132.9 156 53.2
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.8e-29 132.9 160 52.5
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 6.2e-29 131.7 175 51.4
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 6.2e-29 131.7 173 52.0
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.4e-28 130.6 157 52.9
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.4e-28 130.6 157 52.9
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.4e-28 130.6 195 45.1
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.8e-28 130.2 156 52.6
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.8e-28 130.2 143 55.9
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.8e-28 130.2 183 49.7
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 6.8e-28 128.3 158 51.3
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 6.8e-28 128.3 124 60.5
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 8.9e-28 127.9 166 53.0
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.2e-27 127.5 171 50.9
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.2e-27 127.5 163 52.8
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.4e-27 125.9 170 51.2
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 3.4e-27 125.9 138 56.5
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 5.8e-27 125.2 163 52.1
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 7.6e-27 124.8 149 53.0
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.7e-26 123.6 171 49.7
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.7e-26 123.6 154 50.6
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.4e-26 121.7 164 52.4
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.4e-25 120.6 171 46.8
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.9e-25 120.2 163 53.4
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 4.2e-25 119.0 166 46.4
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 5.4e-25 118.6 165 50.3
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.6e-24 117.1 164 50.0
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 3.5e-24 115.9 176 47.2
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 3.5e-24 115.9 176 47.2
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 3.5e-24 115.9 176 47.2
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 4.6e-24 115.5 163 50.3
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.7e-23 113.6 182 50.0
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 5.1e-23 112.1 95 70.5
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.1e-20 104.4 108 59.3
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 6.9e-20 101.7 127 50.4
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.2e-19 100.9 120 53.3
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 5.8e-19 98.6 148 45.3
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.6e-16 90.5 121 52.1
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 3.9e-15 85.9 124 45.2
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 4.3e-14 82.4 111 49.5
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.1e-13 80.1 69 60.9
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 2.1e-13 80.1 84 59.5
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 6.2e-13 78.6 163 36.8
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 4.0e-12 75.9 77 54.5
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 4.0e-12 75.9 175 36.0
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 5.3e-12 75.5 85 55.3
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 9.0e-12 74.7 175 35.4
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.2e-11 74.3 92 46.7
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 8.4e-10 68.2 89 47.2
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.4e-09 66.6 124 38.7
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 3.2e-09 66.2 65 63.1
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 7.1e-09 65.1 95 41.1
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 7.9e-08 61.6 61 57.4


User provided reference genes

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