Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 7.1e-81 303.9 157 100.0
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 5.9e-27 124.8 81 85.2
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 5.9e-27 124.8 81 85.2
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 8.5e-26 120.9 81 79.0
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 8.5e-26 120.9 78 80.8
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 8.5e-26 120.9 81 79.0
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.5e-25 120.2 78 79.5
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.9e-25 119.8 79 79.7
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.9e-25 119.8 81 80.2
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.2e-25 118.6 78 79.5
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.2e-25 118.6 78 79.5
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.2e-25 118.6 78 79.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 4.2e-25 118.6 81 77.8
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 78.2
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 78.2
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 78.2
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 82.1
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 82.1
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 82.1
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 5.5e-25 118.2 81 76.5
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 78.2
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 5.5e-25 118.2 78 82.1
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 7.2e-25 117.9 118 64.4
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 7.2e-25 117.9 81 77.8
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 9.4e-25 117.5 78 78.2
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 9.4e-25 117.5 78 78.2
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 9.4e-25 117.5 78 78.2
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 9.4e-25 117.5 81 75.3
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 9.4e-25 117.5 81 76.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 9.4e-25 117.5 78 78.2
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 9.4e-25 117.5 78 78.2
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 9.4e-25 117.5 81 76.5
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.2e-24 117.1 81 77.8
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 1.2e-24 117.1 78 78.2
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.2e-24 117.1 118 61.0
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.2e-24 117.1 78 76.9
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.2e-24 117.1 79 78.5
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.2e-24 117.1 78 78.2
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.6e-24 116.7 78 78.2
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.6e-24 116.7 81 80.2
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.6e-24 116.7 81 76.5
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-24 116.7 78 78.2
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-24 116.7 78 78.2
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.6e-24 116.7 78 78.2
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 1.6e-24 116.7 78 82.1
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.6e-24 116.7 81 80.2
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.6e-24 116.7 81 80.2
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.1e-24 116.3 81 75.3
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.1e-24 116.3 81 75.3
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.1e-24 116.3 78 76.9
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.7e-24 115.9 81 76.5
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 76.9
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 76.9
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 76.9
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 78.2
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 76.9
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 2.7e-24 115.9 81 75.3
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.7e-24 115.9 81 75.3
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 2.7e-24 115.9 79 75.9
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 78.2
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.7e-24 115.9 78 78.2
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 3.6e-24 115.5 78 76.9
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 3.6e-24 115.5 81 75.3
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 74.1
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 74.1
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.7e-24 115.2 84 73.8
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.7e-24 115.2 79 77.2
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 75.3
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 4.7e-24 115.2 78 75.6
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 76.5
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 74.1
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 76.5
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 4.7e-24 115.2 81 74.1
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 6.1e-24 114.8 81 74.1
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 6.1e-24 114.8 78 76.9
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 6.1e-24 114.8 78 76.9
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 6.1e-24 114.8 78 76.9
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 6.1e-24 114.8 78 76.9
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 6.1e-24 114.8 81 72.8
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 6.1e-24 114.8 78 76.9
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 8.0e-24 114.4 143 51.0
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 8.0e-24 114.4 81 74.1
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.0e-23 114.0 81 75.3
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.4e-23 113.6 81 72.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.4e-23 113.6 78 76.9
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.4e-23 113.6 78 76.9
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.4e-23 113.6 77 79.2
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.4e-23 113.6 78 75.6
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 72.8
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 71.6
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 72.8
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 72.8
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 75.3
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.8e-23 113.2 118 61.0
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 72.8
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 72.8
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.8e-23 113.2 81 72.8
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 2.3e-23 112.8 81 75.3
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 2.3e-23 112.8 81 72.8
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.3e-23 112.8 81 72.8
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.3e-23 112.8 81 72.8
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 2.3e-23 112.8 81 72.8
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.0e-23 112.5 81 74.1
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 3.0e-23 112.5 81 72.8
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.0e-23 112.5 78 74.4
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 4.0e-23 112.1 81 71.6
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 5.2e-23 111.7 146 50.0
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 6.8e-23 111.3 81 74.1
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 6.8e-23 111.3 81 74.1
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 6.8e-23 111.3 81 71.6
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 6.8e-23 111.3 81 71.6
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 8.8e-23 110.9 78 75.6
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.2e-22 110.5 81 69.1
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 1.2e-22 110.5 81 72.8
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.2e-22 110.5 79 73.4
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.2e-22 110.5 81 69.1
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.2e-22 110.5 81 74.1
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.2e-22 110.5 76 75.0
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.6e-22 109.4 81 71.6
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 3.4e-22 109.0 76 73.7
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 3.4e-22 109.0 79 73.4
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 3.4e-22 109.0 78 71.8
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 5.7e-22 108.2 81 72.8
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 7.5e-22 107.8 78 71.8
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 7.5e-22 107.8 81 67.9
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.7e-21 106.7 118 55.9
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.1e-20 104.0 81 70.4
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.4e-20 102.8 80 70.0
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 5.4e-20 101.7 78 67.9
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 7.0e-20 101.3 79 67.1
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.2e-19 100.5 141 48.2
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.3e-17 92.4 81 63.0
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 4.2e-17 92.0 78 64.1
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.4e-15 87.0 81 63.0
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 3.0e-15 85.9 58 74.1
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.0e-15 85.9 58 74.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.0e-15 85.5 132 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-15 84.7 80 62.5
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.4e-12 77.0 63 65.1
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.9e-10 69.3 52 65.4


User provided reference genes

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