Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 5.1e-190 667.5 330 100.0
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 5.1e-190 667.5 330 100.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 4.9e-148 528.1 327 81.0
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.4e-147 525.8 328 79.3
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.2e-146 523.5 329 79.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.7e-145 519.6 334 78.4
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.9e-145 518.5 332 77.7
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 3.1e-142 508.8 330 77.0
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 6.4e-140 501.1 337 76.3
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.6e-138 496.5 328 75.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.6e-138 495.0 330 73.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.1e-134 483.8 326 71.8
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 2.6e-133 479.2 298 77.9
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.9e-132 475.7 297 76.4
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.9e-132 475.7 329 71.4
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 4.9e-132 474.9 332 69.9
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 8.3e-132 474.2 332 70.8
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.4e-131 472.6 327 71.6
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.7e-130 469.2 301 74.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 4.6e-130 468.4 337 70.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 7.8e-130 467.6 339 68.4
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.3e-129 466.1 294 74.5
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.0e-129 465.7 299 73.9
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.1e-128 463.8 294 73.8
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.9e-128 463.0 302 73.2
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 2.5e-128 462.6 326 71.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.3e-128 461.1 327 69.1
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.6e-127 459.9 340 66.5
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.8e-126 456.4 333 66.4
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.4e-126 456.1 294 72.4
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.1e-126 455.7 334 70.1
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.1e-126 455.7 302 72.5
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 5.8e-125 451.4 339 64.6
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 8.4e-124 447.6 357 65.3
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.4e-124 447.6 292 73.3
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.9e-123 446.4 329 64.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.4e-123 446.0 331 67.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.4e-123 446.0 300 70.7
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.4e-123 446.0 328 66.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.4e-123 444.9 306 71.9
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 7.1e-123 444.5 330 67.9
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 9.2e-123 444.1 325 67.4
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.6e-122 443.4 321 68.8
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.6e-122 443.4 327 68.2
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.6e-122 443.4 332 67.2
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 2.1e-122 443.0 297 72.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.7e-122 442.6 299 71.2
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 4.6e-122 441.8 329 64.4
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.7e-121 439.9 329 66.3
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.0e-121 439.1 339 65.2
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 3.0e-121 439.1 295 70.8
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 3.9e-121 438.7 334 65.9
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 3.9e-121 438.7 323 67.2
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.9e-121 438.7 301 68.4
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 3.9e-121 438.7 329 65.3
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 6.6e-121 438.0 327 65.1
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 8.7e-121 437.6 324 66.4
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 8.7e-121 437.6 334 66.8
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 8.7e-121 437.6 315 69.2
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.5e-120 436.0 335 66.0
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 5.6e-120 434.9 329 65.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 5.6e-120 434.9 329 64.1
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.3e-119 433.7 328 66.8
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.3e-119 433.7 294 69.7
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.3e-119 433.7 294 69.7
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.6e-119 433.3 338 64.8
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-119 433.3 333 65.2
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.8e-119 432.6 329 65.0
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.8e-119 431.8 358 61.5
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 4.0e-118 428.7 331 65.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 5.3e-118 428.3 336 63.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.2e-117 427.2 328 65.9
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.5e-117 426.8 331 64.0
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 2.6e-117 426.0 330 64.2
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 4.4e-117 425.2 341 63.6
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 9.9e-117 424.1 330 64.5
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 9.9e-117 424.1 299 69.2
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 9.9e-117 424.1 314 68.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 9.9e-117 424.1 336 64.3
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-116 423.3 304 68.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.8e-116 422.2 303 67.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 8.4e-116 421.0 303 67.7
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.1e-115 420.6 303 67.3
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.4e-115 420.2 314 65.9
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.4e-115 420.2 315 64.8
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.9e-115 419.9 294 69.4
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.9e-115 419.9 299 68.9
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 7.1e-115 417.9 294 68.0
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.6e-114 415.2 325 64.6
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 4.6e-114 415.2 325 64.6
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.8e-114 414.5 292 67.8
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 7.8e-114 414.5 292 67.8
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.7e-113 413.3 287 68.6
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.0e-113 412.5 320 64.1
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-112 410.2 292 66.8
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.6e-112 407.5 301 66.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.6e-111 406.8 294 64.3
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-109 400.6 288 67.4
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-109 399.8 288 66.3
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-109 399.8 331 61.3
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 9.9e-109 397.5 293 64.5
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.2e-108 396.4 302 64.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 4.9e-108 395.2 355 56.9
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 9.3e-107 391.0 354 57.3
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.1e-104 384.0 269 68.4
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 7.4e-104 381.3 265 65.7
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.3e-103 380.6 294 62.6
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.4e-102 377.1 301 61.8
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 5.3e-102 375.2 293 61.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 7.1e-99 364.8 331 59.5
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.8e-97 360.1 293 62.8
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.3e-95 354.0 333 53.8
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.5e-91 339.7 272 62.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 3.5e-90 335.9 293 57.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 7.4e-88 328.2 288 55.2
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.3e-87 327.4 307 51.8
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 8.2e-87 324.7 313 57.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.8e-81 307.0 264 58.7
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.0e-80 303.5 250 62.0
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.2e-75 285.8 289 51.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.7e-72 275.4 198 67.2
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 3.7e-71 272.7 373 41.6
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.8e-70 270.4 301 44.5
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.0e-68 264.6 297 44.8
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.1e-67 261.2 281 49.5
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.7e-66 256.5 293 44.4
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.0e-65 254.6 290 42.1
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.2e-65 252.3 200 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 5.9e-61 238.8 259 47.9
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.3e-60 237.7 161 67.7
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 2.0e-56 223.8 184 59.2
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.8e-49 200.7 234 44.9
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 3.7e-39 166.4 280 34.3
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.3e-39 165.2 119 62.2
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.6e-37 161.0 84 88.1
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 9.8e-32 141.7 124 58.1
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-28 131.3 73 79.5
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.9e-27 127.5 101 62.4
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 3.3e-27 126.7 114 54.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 3.6e-26 123.2 119 50.4
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 6.2e-26 122.5 76 72.4
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.4e-25 121.3 135 46.7
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.0e-24 117.5 87 63.2
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.8e-24 115.2 68 76.5
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 4.6e-21 106.3 101 53.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 3.9e-20 103.2 88 52.3
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 8.6e-20 102.1 176 38.1
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.1e-19 101.7 77 58.4
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-16 91.7 58 72.4
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 8.4e-15 85.5 69 58.0
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.4e-14 84.7 141 39.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.9e-12 76.6 62 56.5
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 8.6e-12 75.5 47 74.5
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.8e-10 70.5 98 49.0
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-09 67.8 51 58.8
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.4e-08 63.2 91 31.9
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.4e-06 58.2 45 68.9


User provided reference genes

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