Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 6.9e-81 303.9 153 100.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-79 299.7 151 99.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.4e-70 269.6 153 84.3
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 5.5e-70 267.7 153 84.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 7.2e-70 267.3 153 84.3
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-69 266.5 153 83.7
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.2e-69 266.5 153 82.4
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 82.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 2.7e-69 265.4 151 83.4
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.3e-68 262.3 153 81.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 3.0e-68 261.9 151 80.8
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.0e-68 261.9 153 82.4
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 5.1e-68 261.2 150 81.3
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 81.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 80.4
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 81.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-67 258.8 148 83.8
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 80.4
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.7e-67 257.7 153 81.0
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 5.7e-67 257.7 151 82.1
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.7e-67 256.9 151 81.5
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 80.4
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 79.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-66 256.1 152 81.6
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.8e-66 255.4 150 80.7
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 79.7
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 81.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 3.7e-66 255.0 153 78.4
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 3.7e-66 255.0 153 79.1
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.8e-66 254.6 150 80.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 4.8e-66 254.6 150 82.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 82.1
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 6.3e-66 254.2 153 79.7
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 8.2e-66 253.8 152 80.3
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.1e-65 253.4 151 81.5
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 78.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 3.1e-65 251.9 153 77.8
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 4.1e-65 251.5 151 78.1
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 77.8
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 77.1
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 5.3e-65 251.1 152 78.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 7.0e-65 250.8 152 77.6
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 77.1
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 9.1e-65 250.4 151 79.5
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.2e-64 250.0 145 82.1
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.2e-64 250.0 152 77.6
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.6e-64 249.6 153 77.1
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.6e-64 249.6 153 77.1
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.0e-64 249.2 151 78.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 76.5
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.5e-64 248.4 155 78.7
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 76.5
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 5.9e-64 247.7 151 78.1
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.7e-64 247.3 150 76.7
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.7e-64 247.3 152 75.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 75.8
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 76.2
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 77.5
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 75.2
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.2e-63 245.7 153 78.4
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.2e-63 245.7 151 76.2
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.9e-63 245.4 150 76.7
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.9e-63 245.4 153 77.1
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 3.8e-63 245.0 151 76.2
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.8e-63 245.0 152 78.9
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 3.8e-63 245.0 150 78.7
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.8e-63 245.0 151 76.2
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 5.0e-63 244.6 152 75.7
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 5.0e-63 244.6 153 77.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 77.8
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.5e-63 244.2 152 75.7
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 77.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 8.5e-63 243.8 150 77.3
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 8.5e-63 243.8 155 76.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 77.5
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.1e-62 243.4 152 75.0
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 76.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 75.2
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.2e-62 241.9 151 74.8
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 5.5e-62 241.1 153 73.2
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.2e-62 240.7 153 77.8
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 73.9
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.2e-61 240.0 145 75.2
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 72.5
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 71.9
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.1e-61 237.7 151 75.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 8.0e-61 237.3 153 73.2
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.0e-60 236.9 151 74.8
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.4e-60 236.5 150 76.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.3e-60 235.7 151 72.8
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.3e-60 235.7 151 71.5
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 3.0e-60 235.3 149 76.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 4.0e-60 235.0 153 71.9
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 6.7e-60 234.2 153 70.6
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.1e-59 233.4 150 74.7
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 71.3
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 5.7e-59 231.1 148 76.4
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 7.5e-59 230.7 148 73.6
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 9.7e-59 230.3 151 71.5
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.2e-58 229.2 153 69.9
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 2.8e-58 228.8 153 66.0
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.8e-57 226.1 153 66.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 2.4e-57 225.7 151 70.9
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 3.1e-57 225.3 153 64.7
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 4.1e-57 224.9 153 64.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 5.3e-57 224.6 155 71.0
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.3e-57 224.6 155 70.3
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 9.1e-57 223.8 153 64.7
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.2e-56 223.4 150 65.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.2e-56 223.4 150 65.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.6e-56 223.0 150 66.0
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.6e-56 223.0 151 64.9
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.0e-56 222.6 150 65.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 2.7e-56 222.2 150 65.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 2.7e-56 222.2 150 65.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 3.5e-56 221.9 151 66.2
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.3e-55 219.9 150 65.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.2e-55 219.2 153 63.4
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.5e-55 217.2 150 74.0
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.5e-54 214.5 143 73.4
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.7e-53 211.5 153 63.4
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 8.0e-53 210.7 151 63.6
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 5.2e-52 208.0 168 57.1
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-49 199.9 153 66.0
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.1e-49 198.7 120 79.2
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 5.4e-49 198.0 152 57.9
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 7.0e-49 197.6 153 60.1
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.2e-48 196.8 149 59.7
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 2.0e-48 196.1 121 76.0
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.2e-47 192.6 122 74.6
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.8e-44 183.0 142 60.6
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.2e-42 176.0 149 54.4
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.8e-41 172.9 111 70.3
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-40 169.9 181 54.1
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 5.9e-40 167.9 111 67.6
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-39 166.8 124 73.4
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.2e-34 149.4 95 76.8
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 4.1e-33 145.2 149 45.0
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.7e-32 142.5 75 88.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.7e-31 139.8 78 82.1
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.6e-31 137.5 100 71.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 3.6e-29 132.1 144 47.2
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 4.0e-28 128.6 75 76.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 4.1e-25 118.6 75 77.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.4e-25 118.2 65 80.0
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-24 116.3 65 78.5
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 3.5e-24 115.5 75 73.3
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 4.6e-24 115.2 80 72.5
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.9e-23 112.1 78 71.8
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 9.5e-22 107.5 89 61.8
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.4e-20 103.6 149 40.3
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 9.9e-11 70.9 53 67.9
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.3e-06 55.5 62 46.8


User provided reference genes

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