Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.8e-61 238.4 121 100.0
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 2.4e-60 235.3 121 98.3
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 7.8e-35 150.6 127 64.6
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 2.8e-32 142.1 126 61.1
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 2.3e-31 139.0 126 59.5
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 2.6e-30 135.6 131 59.5
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 8.3e-29 130.6 126 55.6
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.8e-28 129.4 103 68.9
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 3.5e-27 125.2 103 68.9
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 5.9e-27 124.4 130 56.2
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 5.9e-27 124.4 111 61.3
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.0e-26 123.6 84 72.6
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 8.9e-23 110.5 62 91.9
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 4.4e-22 108.2 116 55.2
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 3.7e-21 105.1 107 55.1
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 8.3e-21 104.0 113 56.6
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.9e-20 102.8 111 53.2
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 2.4e-20 102.4 91 59.3
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 4.1e-20 101.7 116 56.0
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 4.1e-20 101.7 112 56.2
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 5.4e-20 101.3 110 52.7
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 5.4e-20 101.3 116 52.6
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 7.0e-20 100.9 104 57.7
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 7.0e-20 100.9 110 55.5
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.6e-19 99.8 108 54.6
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 2.7e-19 99.0 112 51.8
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 2.7e-19 99.0 75 66.7
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 6.0e-19 97.8 112 55.4
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 6.0e-19 97.8 113 50.4
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.3e-18 96.7 110 52.7
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 3.9e-18 95.1 109 54.1
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 3.9e-18 95.1 112 51.8
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 1.5e-17 93.2 113 50.4
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 4.3e-17 91.7 108 50.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 7.3e-17 90.9 97 54.6
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 9.5e-17 90.5 108 50.9
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 9.5e-17 90.5 97 55.7
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.6e-16 89.7 112 47.3
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.8e-16 89.0 75 60.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 4.7e-16 88.2 97 54.6
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.7e-16 88.2 113 49.6
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.2e-16 87.8 89 56.2
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.2e-16 87.8 89 56.2
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 8.1e-16 87.4 112 49.1
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.8e-15 86.3 104 50.0
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.8e-15 86.3 68 63.2
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.8e-15 86.3 105 47.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.3e-15 85.9 104 50.0
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.3e-15 85.9 117 47.0
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 4.0e-15 85.1 94 52.1
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 6.8e-15 84.3 101 51.5
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 8.9e-15 84.0 59 69.5
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 8.9e-15 84.0 85 54.1
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 2.6e-14 82.4 99 49.5
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 4.4e-14 81.6 104 51.9
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 5.8e-14 81.3 108 49.1
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 5.8e-14 81.3 92 50.0
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 5.8e-14 81.3 114 44.7
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.3e-13 80.1 108 47.2
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 1.3e-13 80.1 82 56.1
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 1.7e-13 79.7 121 45.5
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.2e-13 79.3 119 46.2
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.7e-13 78.6 123 43.1
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 3.7e-13 78.6 107 44.9
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 6.4e-13 77.8 53 66.0
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 6.4e-13 77.8 113 45.1
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 6.4e-13 77.8 104 48.1
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 8.3e-13 77.4 94 50.0
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 8.3e-13 77.4 65 58.5
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.1e-12 77.0 73 54.8
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.2e-12 75.5 124 44.4
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.2e-12 75.5 123 42.3
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.2e-12 75.5 70 52.9
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 4.1e-12 75.1 55 67.3
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.1e-12 75.1 65 56.9
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 5.4e-12 74.7 96 49.0
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 7.1e-12 74.3 69 56.5
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.2e-11 73.6 123 41.5
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 1.2e-11 73.6 121 43.0
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.6e-11 73.2 70 51.4
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.1e-11 72.8 122 42.6
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 3.5e-11 72.0 97 46.4
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 3.5e-11 72.0 61 59.0
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 6.0e-11 71.2 73 57.5
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 6.0e-11 71.2 73 57.5
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 6.0e-11 71.2 73 57.5
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 7.8e-11 70.9 95 42.1
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 7.8e-11 70.9 103 44.7
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.3e-10 70.1 115 39.1
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.3e-10 70.1 83 51.8
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-10 69.7 107 43.0
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 2.3e-10 69.3 100 47.0
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 3.9e-10 68.6 54 61.1
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 8.6e-10 67.4 83 48.2
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 87 49.4
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 87 49.4
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.5e-09 66.6 70 50.0
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 1.9e-09 66.2 60 51.7
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.9e-09 66.2 87 49.4
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 3.3e-09 65.5 81 53.1
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 4.3e-09 65.1 57 59.6
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 9.5e-09 63.9 109 39.4
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.2e-08 63.5 83 47.0
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 2.1e-08 62.8 89 44.9
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.4e-07 60.1 61 47.5
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 3.1e-07 58.9 60 50.0
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-06 57.0 50 58.0
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 4.4e-06 55.1 66 48.5
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 4.4e-06 55.1 67 47.8
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 5.8e-06 54.7 86 44.2


User provided reference genes

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