Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 2.1e-41 171.8 79 100.0
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.2e-33 146.0 79 86.1
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 1.6e-33 145.6 78 85.9
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 1.6e-33 145.6 78 85.9
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.6e-33 145.6 78 85.9
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.6e-33 145.6 78 85.9
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.8e-32 142.1 77 84.4
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-32 142.1 78 83.3
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 8.9e-32 139.8 78 83.3
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 1.2e-31 139.4 78 80.8
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 2.0e-31 138.7 78 83.3
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.4e-31 137.9 78 83.3
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 5.8e-31 137.1 78 82.1
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 3.8e-30 134.4 98 69.4
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.8e-30 134.4 98 69.4
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 4.9e-30 134.0 97 69.1
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 1.1e-29 132.9 83 78.3
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.9e-29 132.1 100 66.0
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 5.4e-29 130.6 69 88.4
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 9.2e-29 129.8 98 67.3
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.2e-29 129.8 102 64.7
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.2e-29 129.8 102 64.7
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.2e-29 129.8 102 64.7
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.2e-29 129.8 102 64.7
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 2.1e-28 128.6 82 76.8
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 2.7e-28 128.3 78 79.5
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 3.5e-28 127.9 92 69.6
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.0e-27 126.3 78 76.9
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 2.5e-26 121.7 72 80.6
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.2e-25 119.4 96 62.5
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 8.1e-25 116.7 73 78.1
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 2.7e-20 101.7 59 78.0
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 2.7e-20 101.7 59 78.0
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 2.7e-20 101.7 59 78.0
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 2.7e-20 101.7 59 78.0
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 2.7e-20 101.7 59 78.0
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 2.7e-20 101.7 59 78.0
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 3.5e-20 101.3 78 62.8
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 7.8e-20 100.1 63 73.0
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 3.9e-19 97.8 52 86.5
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 6.6e-19 97.1 59 76.3
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 8.7e-19 96.7 51 82.4
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 1.3e-17 92.8 51 80.4
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 1.3e-17 92.8 51 80.4
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 2.8e-17 91.7 66 68.2
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 3.6e-17 91.3 52 76.9
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 8.1e-17 90.1 65 67.7
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 8.1e-17 90.1 61 72.1
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 3.1e-16 88.2 60 73.3
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 9.0e-16 86.7 77 57.1
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 4.5e-15 84.3 69 65.2
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 5.8e-15 84.0 63 63.5
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 1.7e-14 82.4 56 69.6
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 2.2e-14 82.0 60 60.0
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.9e-13 79.0 51 70.6
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 5.4e-13 77.4 67 59.7
Nn6g32821 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.1e-13 77.0 39 84.6
Nn6g32826 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.1e-13 77.0 39 84.6
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.6e-12 75.9 51 68.6
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.6e-12 75.9 51 68.6
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.6e-12 75.9 51 68.6
Potri.005G037850 Populus trichocarpa HOM05D007952 ORTHO05D009823 2.1e-12 75.5 52 71.2
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 7.9e-12 73.6 53 64.2
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 1.1e-10 69.7 63 57.1
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 1.5e-10 69.3 55 67.3
Nn6g33130 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.4e-10 67.0 34 82.4
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 7.4e-10 67.0 44 70.5
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 3.7e-09 64.7 54 59.3
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 8.1e-09 63.5 70 52.9
Nitab4.5_0007025g0020 Nicotiana tabacum HOM05D001226 ORTHO05D009823 2.4e-08 62.0 54 53.7
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 1.7e-06 55.8 27 96.3
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-06 55.5 40 62.5
CAN.G8.21 Capsicum annuum HOM05D000580 ORTHO05D001362 4.9e-06 54.3 45 57.8
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 8.4e-06 53.5 27 92.6
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 8.4e-06 53.5 27 92.6
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 8.4e-06 53.5 27 92.6
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 8.4e-06 53.5 27 92.6
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 8.4e-06 53.5 27 92.6
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 8.4e-06 53.5 27 92.6
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 8.4e-06 53.5 27 92.6
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 8.4e-06 53.5 27 92.6


User provided reference genes

Program Settings