Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 4.6e-127 458.0 245 100.0
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 9.6e-125 450.3 245 96.7
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 1.3e-92 343.6 249 74.7
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 6.3e-92 341.3 247 74.1
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 9.1e-91 337.4 249 79.5
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.6e-90 335.9 249 74.3
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.4e-88 330.1 249 71.5
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 2.5e-88 329.3 251 77.7
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.2e-87 327.0 271 69.0
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 2.3e-86 322.8 249 74.3
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.1e-85 320.5 248 69.0
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 5.7e-85 318.2 211 80.1
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 2.9e-81 305.8 261 70.1
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 2.1e-79 299.7 246 71.1
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 7.9e-79 297.7 248 71.0
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.1e-77 293.9 248 66.5
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 5.7e-77 291.6 252 68.3
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.7e-76 290.0 248 63.7
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 8.2e-76 287.7 248 63.7
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 8.2e-76 287.7 250 63.2
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 1.4e-75 287.0 249 69.1
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.8e-75 286.6 246 69.1
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.1e-75 285.8 250 68.0
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 3.1e-75 285.8 250 68.0
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 5.3e-75 285.0 247 64.8
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.0e-73 280.8 249 62.7
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 1.3e-73 280.4 248 66.9
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 5.0e-73 278.5 252 63.5
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 6.5e-73 278.1 257 61.9
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 1.5e-72 276.9 269 61.0
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.1e-71 273.1 202 71.3
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 2.7e-71 272.7 251 66.5
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 8.8e-70 267.7 248 69.4
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.5e-69 266.9 248 69.0
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.6e-69 266.2 250 65.6
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 5.7e-69 265.0 259 60.2
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 2.8e-68 262.7 246 60.6
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 6.3e-68 261.5 246 67.5
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 1.1e-67 260.8 256 60.2
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 2.7e-66 256.1 275 61.5
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.5e-66 255.8 254 57.9
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.3e-65 253.8 251 58.6
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 2.2e-65 253.1 255 60.8
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 6.5e-65 251.5 250 63.2
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 1.1e-64 250.8 249 58.2
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 1.5e-64 250.4 251 64.1
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.9e-64 250.0 204 68.1
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 9.4e-64 247.7 250 62.8
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 9.4e-64 247.7 247 57.5
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 9.4e-64 247.7 250 59.2
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.2e-63 247.3 252 57.9
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.2e-63 247.3 252 57.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.6e-63 246.9 254 60.6
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 2.7e-63 246.1 258 62.4
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 6.1e-63 245.0 247 61.5
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.4e-62 243.8 258 64.0
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.4e-62 243.8 261 62.5
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 1.8e-62 243.4 248 59.7
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 4.0e-62 242.3 247 57.1
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 6.8e-62 241.5 259 57.5
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.6e-61 239.6 251 62.5
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 4.4e-61 238.8 247 59.1
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 1.3e-60 237.3 252 57.5
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 2.2e-60 236.5 250 55.6
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 4.8e-60 235.3 247 60.7
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 6.3e-60 235.0 248 54.0
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 8.3e-60 234.6 247 60.7
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.4e-59 233.8 249 53.8
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.4e-59 233.8 255 54.9
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 4.1e-59 232.3 248 54.0
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 5.4e-59 231.9 247 59.9
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 7.0e-59 231.5 247 59.9
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 9.1e-59 231.1 279 56.3
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.2e-58 230.7 185 69.2
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.7e-58 229.6 297 53.9
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 6.5e-57 224.9 186 64.0
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 8.6e-57 224.6 182 66.5
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 8.6e-57 224.6 251 58.6
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 8.6e-57 224.6 251 55.0
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.1e-56 224.2 251 60.6
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.9e-56 223.4 256 54.3
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 2.5e-56 223.0 247 53.4
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 2.5e-56 223.0 251 55.0
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 4.2e-56 222.2 252 52.0
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.1e-55 219.9 257 54.1
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 8.0e-55 218.0 195 63.6
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 3.0e-54 216.1 262 50.4
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 3.0e-54 216.1 190 62.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 3.0e-54 216.1 190 62.1
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 3.0e-54 216.1 250 54.8
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 2.0e-53 213.4 256 52.7
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 3.4e-53 212.6 187 61.5
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 1.3e-52 210.7 258 51.9
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 3.7e-52 209.1 190 60.5
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.4e-51 207.2 190 60.0
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.8e-51 206.8 190 60.0
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 5.4e-51 205.3 251 53.0
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 3.8e-49 199.1 187 59.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 1.5e-48 197.2 257 55.3
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.6e-47 193.7 245 55.5
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 3.6e-47 192.6 184 56.5
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 4.7e-47 192.2 268 49.3
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 6.1e-47 191.8 245 55.5
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 6.1e-47 191.8 214 55.1
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.2e-45 187.6 133 74.4
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 7.5e-45 184.9 245 47.8
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 1.7e-44 183.7 185 57.8
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 1.4e-43 180.6 136 73.5
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 4.6e-42 175.6 136 70.6
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.9e-42 175.3 150 64.7
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.7e-41 173.7 150 64.0
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 1.9e-35 153.7 262 41.2
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.2e-35 152.9 121 68.6
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 9.2e-35 151.4 250 44.0
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 6.0e-34 148.7 257 40.9
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 6.6e-33 145.2 232 43.5
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 9.5e-32 141.4 264 48.1
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 9.5e-32 141.4 134 62.7
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 8.9e-30 134.8 188 48.4
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 5.1e-25 119.0 179 45.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 6.6e-25 118.6 73 78.1
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 9.5e-24 114.8 178 50.0
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.4e-22 110.9 163 56.4
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.2e-21 107.8 74 78.4
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 7.6e-21 105.1 58 87.9
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 2.4e-19 100.1 136 44.1
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 2.1e-18 97.1 180 37.8
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 1.4e-14 84.3 224 34.4
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-13 81.3 98 51.0
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.2e-13 81.3 89 50.6
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 5.8e-13 79.0 56 73.2
FAN15G2545 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.1e-09 65.9 121 50.4
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 1.1e-08 64.7 229 35.8
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 3.3e-08 63.2 121 38.8
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 5.6e-08 62.4 92 43.5
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 2.8e-07 60.1 124 37.9
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 3.6e-07 59.7 121 37.2
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 3.1e-06 56.6 92 44.6


User provided reference genes

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