Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PGW3V5 Arachis hypogaea HOM05D002660 ORTHO05D003902 5.0e-87 324.3 153 100.0
arahy.Tifrunner.gnm1.ann1.UMNW15 Arachis hypogaea HOM05D002660 ORTHO05D003902 5.0e-87 324.3 153 100.0
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 1.6e-21 106.7 95 52.6
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 7.1e-17 91.3 151 42.4
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.2e-16 90.5 152 39.5
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 6.0e-16 88.2 95 53.7
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 6.0e-16 88.2 80 52.5
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-15 87.4 68 63.2
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-15 87.4 68 63.2
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-15 87.4 68 63.2
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-15 87.4 68 63.2
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-15 87.4 68 63.2
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 1.0e-15 87.4 68 63.2
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-15 85.5 75 62.7
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-15 85.5 75 62.7
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-15 85.5 75 62.7
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-15 85.5 75 62.7
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-15 85.5 75 62.7
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 5.1e-15 85.1 56 71.4
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 7.3e-14 81.3 129 40.3
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 2.1e-13 79.7 56 67.9
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 2.8e-13 79.3 66 57.6
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 3.6e-13 79.0 68 55.9
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 4.7e-13 78.6 66 56.1
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.1e-12 77.4 69 55.1
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-12 77.0 74 59.5
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.1e-12 75.9 76 51.3
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 3.1e-12 75.9 76 51.3
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 3.1e-12 75.9 76 51.3
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 3.1e-12 75.9 76 51.3
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 6.8e-12 74.7 56 62.5
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 6.8e-12 74.7 56 62.5
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 1.5e-11 73.6 57 63.2
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 2.6e-11 72.8 56 60.7
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.4e-11 72.0 56 62.5
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 4.4e-11 72.0 56 62.5
SabraMtG0005500 Salix brachista HOM05D002660 ORTHO05D003902 4.4e-11 72.0 131 38.2
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 9.9e-11 70.9 70 55.7
ATR0575G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 2.2e-10 69.7 56 58.9
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 2.2e-10 69.7 56 58.9
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.2e-10 69.7 56 58.9
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 8.4e-10 67.8 83 47.0
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.4e-10 67.8 66 53.0
SGA_v2.0_scaffold507G52551 Striga asiatica HOM05D002660 ORTHO05D003902 3.2e-09 65.9 59 54.2
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 4.1e-09 65.5 66 47.0
ATR0661G179 Amborella trichopoda HOM05D002660 ORTHO05D003902 1.2e-08 63.9 52 57.7
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 1.2e-08 63.9 51 58.8
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 3.5e-08 62.4 61 50.8
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 4.6e-08 62.0 101 38.6
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 1.0e-07 60.8 48 60.4
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 3.9e-07 58.9 44 63.6
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-06 56.2 44 56.8
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-06 56.2 44 56.8
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-06 56.2 44 56.8
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 2.5e-06 56.2 64 48.4
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 7.3e-06 54.7 49 53.1


User provided reference genes

Program Settings