Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 3.9e-151 539.3 612 100.0
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 1.1e-140 504.6 607 97.5
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 1.1e-28 132.5 618 60.5
arahy.Tifrunner.gnm1.ann1.TF3CHY Arachis hypogaea HOM05D000981 ORTHO05D000845 9.7e-25 119.4 90 68.9
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 4.8e-24 117.1 123 55.3
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 1.4e-23 115.5 135 45.2
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 5.3e-23 113.6 156 44.9
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 1.5e-22 112.1 111 48.6
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 2.6e-22 111.3 113 47.8
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 2.6e-22 111.3 106 50.0
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 3.4e-22 110.9 115 51.3
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 1.3e-21 109.0 79 64.6
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 6.5e-21 106.7 108 45.4
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 8.5e-21 106.3 114 50.9
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 4.2e-20 104.0 161 37.9
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 1.2e-19 102.4 121 43.8
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 2.1e-19 101.7 175 38.3
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 2.1e-19 101.7 161 37.3
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 2.1e-19 101.7 88 50.0
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 3.6e-19 100.9 157 40.1
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 4.7e-19 100.5 164 38.4
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 7.9e-19 99.8 169 40.8
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 1.8e-18 98.6 163 36.2
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 6.7e-18 96.7 171 38.6
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 6.7e-18 96.7 147 41.5
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 6.7e-18 96.7 62 72.6
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 6.7e-18 96.7 171 37.4
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 8.8e-18 96.3 170 37.6
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 8.8e-18 96.3 152 38.2
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 1.5e-17 95.5 153 40.5
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 2.0e-17 95.1 152 41.4
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 2.6e-17 94.7 130 40.0
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 2.6e-17 94.7 162 38.3
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 3.3e-17 94.4 121 38.8
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 3.3e-17 94.4 167 38.3
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 4.4e-17 94.0 103 45.6
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 5.7e-17 93.6 178 36.0
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 9.7e-17 92.8 107 43.9
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 9.7e-17 92.8 166 37.3
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 1.7e-16 92.0 150 40.7
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 2.2e-16 91.7 157 40.8
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 6.3e-16 90.1 77 54.5
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 4.1e-15 87.4 139 40.3
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 7.0e-15 86.7 82 45.1
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 9.1e-15 86.3 166 34.3
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.5e-14 85.5 89 42.7
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 2.6e-14 84.7 129 38.0
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 1.3e-13 82.4 86 43.0
Glyma.06G196100 Glycine max HOM05D007763 ORTHO05D021545 2.2e-13 81.6 176 50.0
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 2.9e-13 81.3 79 50.6
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 3.8e-13 80.9 141 36.9
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 5.0e-13 80.5 116 38.8
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 6.5e-13 80.1 68 52.9
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.1e-12 79.3 178 34.3
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 2.5e-12 78.2 172 36.0
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 2.5e-12 78.2 120 39.2
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 2.5e-12 78.2 68 54.4
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 5.5e-12 77.0 79 46.8
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 9.4e-12 76.3 69 50.7
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 9.4e-12 76.3 151 35.1
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 9.4e-12 76.3 70 44.3
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 1.6e-11 75.5 138 39.1
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 6.1e-11 73.6 139 38.8
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 6.1e-11 73.6 139 38.8
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 8.0e-11 73.2 64 54.7
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 8.0e-11 73.2 133 39.8
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 8.0e-11 73.2 139 38.8
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 1.0e-10 72.8 104 41.3
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 2.3e-10 71.6 64 54.7
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 2.3e-10 71.6 64 54.7
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 2.3e-10 71.6 64 54.7
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 3.9e-10 70.9 127 35.4
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 5.2e-10 70.5 124 33.1
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 6.7e-10 70.1 72 47.2
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 8.8e-10 69.7 88 43.2
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 1.1e-09 69.3 172 34.3
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 1.1e-09 69.3 64 53.1
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 1.1e-09 69.3 79 43.0
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 4.4e-09 67.4 126 34.9
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 5.7e-09 67.0 71 45.1
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 9.7e-09 66.2 104 41.3
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 1.3e-08 65.9 70 45.7
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 2.8e-08 64.7 73 41.1
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 6.3e-08 63.5 73 41.1
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 6.3e-08 63.5 73 39.7
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 1.8e-07 62.0 85 40.0
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 3.1e-07 61.2 80 38.8
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 7.0e-07 60.1 54 48.1
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 3.5e-06 57.8 95 37.9
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 7.7e-06 56.6 57 43.9


User provided reference genes

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