Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 0.0e+00 1475.7 729 100.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 0.0e+00 1407.5 734 95.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.8e-265 917.9 724 65.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.3e-265 917.5 723 64.5
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 7.7e-263 910.6 730 64.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 3.2e-261 905.2 725 64.0
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.0e-260 900.6 731 63.2
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.0e-259 900.2 725 64.1
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-258 896.3 731 64.2
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.4e-258 895.2 722 63.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.7e-258 894.4 711 63.6
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.7e-255 885.6 731 61.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.7e-239 832.4 712 59.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.5e-237 825.9 716 59.1
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.8e-235 819.7 716 58.4
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-233 812.8 713 57.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.0e-231 804.7 728 57.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.2e-228 794.7 727 55.8
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.3e-227 792.7 736 56.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 9.8e-226 787.3 736 56.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.3e-225 786.9 740 54.3
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.9e-224 783.1 731 55.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.4e-224 782.7 755 54.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 7.8e-223 777.7 730 53.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 3.0e-222 775.8 716 54.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 8.9e-219 764.2 724 54.1
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.4e-218 762.3 716 54.9
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 4.4e-218 761.9 726 54.3
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.8e-218 761.5 726 53.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.7e-217 760.0 733 53.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.9e-217 758.4 724 55.1
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-216 756.9 725 55.2
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.2e-215 753.8 730 52.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.6e-215 753.4 723 54.8
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.5e-215 752.3 703 55.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 6.0e-215 751.5 728 54.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.2e-212 743.8 726 54.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 4.7e-212 741.9 728 52.9
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 8.1e-212 741.1 710 51.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.2e-211 738.4 731 52.1
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.4e-210 735.3 723 52.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.9e-209 731.9 743 52.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.9e-208 729.9 763 51.4
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.1e-208 728.0 736 52.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.3e-208 727.6 739 50.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-207 727.2 742 50.9
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.5e-207 725.7 729 51.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.6e-207 725.3 722 53.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.0e-206 724.2 728 51.9
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.3e-206 723.8 722 52.8
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.7e-206 723.4 730 51.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.6e-206 721.5 733 52.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 8.7e-206 721.1 728 51.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-205 719.9 709 55.0
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-205 719.9 725 52.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.6e-205 718.4 720 52.6
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 5.6e-205 718.4 764 49.6
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.3e-205 718.0 720 52.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.8e-204 716.1 730 52.2
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 6.2e-204 714.9 745 52.5
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.4e-203 713.0 736 51.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.0e-202 709.9 722 52.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 7.6e-202 708.0 718 51.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 7.6e-202 708.0 722 51.8
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.8e-201 705.7 739 50.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.4e-201 704.9 739 50.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.1e-200 704.1 754 49.9
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.9e-200 703.4 723 49.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 6.0e-199 698.4 709 54.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.0e-198 697.6 736 50.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.9e-198 695.7 657 55.6
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.1e-198 695.3 724 51.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.1e-197 694.1 721 50.5
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.1e-197 694.1 726 50.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.8e-196 689.5 727 49.2
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-195 686.8 880 44.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.1e-195 686.0 718 50.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.0e-194 683.3 729 50.6
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.6e-194 682.9 729 49.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.8e-194 681.8 733 49.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.9e-193 678.7 719 48.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.4e-192 677.2 725 49.8
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.9e-192 676.8 725 49.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-190 671.0 663 52.3
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.1e-190 668.7 722 48.1
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.5e-189 667.2 646 54.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.9e-189 666.8 716 48.5
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.5e-189 666.4 631 54.0
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.3e-188 664.1 745 48.6
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.8e-188 662.9 732 48.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.4e-187 660.6 720 48.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.4e-187 660.6 723 49.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.2e-186 657.5 721 47.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.4e-186 656.0 721 47.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.8e-186 655.2 686 50.9
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.0e-185 654.4 724 47.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-184 649.0 730 47.1
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.6e-183 647.1 730 47.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-183 646.0 729 46.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.9e-182 642.5 737 46.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.1e-181 641.0 723 48.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 4.3e-181 639.0 717 46.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 7.4e-181 638.3 721 46.7
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.7e-180 636.0 743 45.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 6.2e-180 635.2 717 46.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 6.2e-180 635.2 717 46.0
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 6.2e-180 635.2 717 46.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 8.2e-180 634.8 622 52.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 3.1e-179 632.9 727 46.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 5.3e-179 632.1 729 45.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-178 630.6 743 47.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.8e-178 628.6 721 46.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.6e-178 628.2 724 45.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 8.4e-177 624.8 727 46.9
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.9e-175 618.2 719 46.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.3e-174 617.5 738 45.7
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.7e-172 609.4 776 43.3
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 6.1e-167 592.0 724 45.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.1e-166 589.0 721 44.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-165 587.8 724 45.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.5e-165 586.6 693 48.3
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.3e-165 585.9 723 46.1
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-162 575.9 726 43.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 5.9e-162 575.5 732 45.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 4.7e-159 565.8 718 44.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.1e-155 554.7 717 43.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 7.0e-155 552.0 568 51.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.0e-145 519.2 725 41.4
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.8e-140 503.4 590 46.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.1e-136 491.5 574 48.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-134 481.9 331 65.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 4.4e-133 479.6 735 40.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 3.1e-118 430.3 578 42.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.6e-106 391.3 316 56.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 3.3e-96 357.1 424 47.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.0e-89 334.0 332 51.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.0e-89 334.0 204 77.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.5e-88 330.9 259 56.4
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.2e-84 317.8 330 49.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.1e-82 311.2 256 55.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 5.3e-70 270.0 144 91.7
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.6e-69 267.7 598 32.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.8e-69 266.5 444 36.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.5e-66 257.3 497 35.4
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 3.9e-65 253.8 164 73.2
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.6e-58 230.7 316 42.4
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 7.9e-58 229.6 570 28.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 6.7e-57 226.5 181 60.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.2e-55 219.5 213 51.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 9.0e-54 216.1 146 65.8
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.2e-52 211.5 595 27.6
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.9e-51 208.4 251 47.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-45 188.3 197 49.7
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 4.4e-40 170.6 129 61.2
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.2e-39 166.4 111 66.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-38 166.0 99 75.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-38 166.0 99 75.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-38 166.0 99 75.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.8e-38 165.2 177 46.3
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.5e-35 155.6 194 43.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-34 151.0 83 90.4
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.0e-28 132.9 252 35.3
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.1e-26 125.2 330 30.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.0e-26 123.2 417 26.4
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.4e-22 112.5 255 32.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.5e-20 103.2 199 34.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 7.2e-19 100.1 235 29.8
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-17 96.3 59 69.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-16 92.8 82 54.9
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.8e-15 88.2 131 35.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 73 52.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 73 52.1
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.9e-12 78.2 54 66.7


User provided reference genes

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