Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 8.0e-111 403.7 190 100.0
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 9.1e-99 363.6 184 95.7
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.1e-58 229.6 120 93.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 7.8e-58 227.6 116 96.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 1.3e-57 226.9 116 95.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.9e-57 225.3 116 94.8
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 8.7e-57 224.2 116 94.0
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.4e-54 216.9 114 91.2
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 4.0e-54 215.3 116 89.7
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 9.9e-53 210.7 140 78.6
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.3e-52 210.3 116 88.8
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.7e-52 209.9 113 89.4
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.1e-50 203.0 122 77.9
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 3.5e-50 202.2 116 84.5
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.3e-49 200.3 116 82.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 3.0e-49 199.1 115 80.9
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 6.6e-49 198.0 116 82.8
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.1e-48 197.2 116 81.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.1e-48 197.2 116 81.9
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.5e-48 196.8 116 78.4
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.6e-48 194.1 116 81.0
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.3e-47 193.7 110 81.8
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.3e-47 193.7 116 81.9
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.6e-47 193.4 141 67.4
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.1e-47 193.0 116 78.4
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.1e-47 193.0 122 76.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 3.6e-47 192.2 116 78.4
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.8e-47 191.8 116 77.6
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 6.2e-47 191.4 115 78.3
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 6.2e-47 191.4 127 72.4
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.1e-46 190.7 112 80.4
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.4e-46 190.3 116 78.4
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 4.0e-46 188.7 116 77.6
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 4.0e-46 188.7 111 80.2
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 6.9e-46 188.0 114 78.1
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 9.0e-46 187.6 114 78.1
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 9.0e-46 187.6 114 77.2
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.2e-45 187.2 114 77.2
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.5e-45 186.8 116 75.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 1.5e-45 186.8 111 77.5
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.0e-45 186.4 114 77.2
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 2.0e-45 186.4 114 77.2
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.0e-45 186.4 114 77.2
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 2.6e-45 186.0 116 77.6
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.6e-45 186.0 140 65.0
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 2.6e-45 186.0 116 77.6
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.5e-45 185.3 114 76.3
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 4.5e-45 185.3 111 76.6
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 7.6e-45 184.5 112 77.7
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.3e-44 183.7 116 76.7
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 1.7e-44 183.3 111 78.4
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.2e-44 183.0 112 75.9
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.9e-44 182.6 116 75.9
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.9e-44 182.6 115 74.8
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 2.9e-44 182.6 112 76.8
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 3.8e-44 182.2 116 75.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 4.9e-44 181.8 114 74.6
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.9e-44 181.8 116 75.0
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.1e-43 180.6 112 75.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.4e-43 180.3 111 76.6
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 3.2e-43 179.1 114 74.6
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 9.3e-43 177.6 116 73.3
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 9.3e-43 177.6 116 74.1
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 9.3e-43 177.6 116 73.3
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.6e-42 176.8 112 74.1
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.1e-42 176.4 116 73.3
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.7e-42 176.0 111 73.0
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 4.6e-42 175.3 111 73.0
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 4.6e-42 175.3 113 72.6
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 6.0e-42 174.9 113 73.5
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 6.0e-42 174.9 111 73.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.0e-41 174.1 111 73.0
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.0e-41 174.1 111 73.9
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.3e-41 173.7 111 72.1
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.3e-41 173.7 111 72.1
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.3e-41 173.7 111 72.1
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 2.3e-41 172.9 111 73.9
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 3.0e-41 172.6 111 72.1
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.9e-41 172.2 111 72.1
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 3.9e-41 172.2 119 68.1
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 5.1e-41 171.8 111 71.2
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 6.7e-41 171.4 119 66.4
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 6.7e-41 171.4 115 69.6
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 6.7e-41 171.4 111 73.0
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.5e-40 170.2 108 73.1
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.5e-40 170.2 111 69.4
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.5e-40 169.5 111 72.1
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.5e-40 169.5 113 69.9
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 9.6e-40 167.5 111 69.4
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 9.6e-40 167.5 111 69.4
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 9.6e-40 167.5 116 68.1
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 3.7e-39 165.6 115 70.4
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.4e-38 162.9 111 67.6
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 4.0e-38 162.2 115 68.7
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 6.9e-38 161.4 132 60.6
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-37 159.5 111 66.7
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 3.4e-37 159.1 100 82.0
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 5.8e-37 158.3 126 60.3
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.5e-35 152.9 110 63.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 3.2e-35 152.5 106 67.0
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 2.7e-34 149.4 101 67.3
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 3.5e-34 149.1 102 65.7
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 4.6e-34 148.7 109 64.2
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 6.0e-34 148.3 106 66.0
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.3e-33 146.4 108 62.0
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 8.7e-33 144.4 86 75.6
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.3e-32 142.5 86 75.6
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 2.8e-31 139.4 101 67.3
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 4.8e-31 138.7 107 59.8
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 5.3e-30 135.2 86 72.1
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.0e-29 133.3 134 53.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.0e-28 131.0 122 54.1
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.0e-28 131.0 107 60.7
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 2.9e-28 129.4 106 57.5
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.9e-28 129.4 179 42.5
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.9e-27 126.7 73 83.6
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.8e-25 120.2 66 84.8
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.3e-25 119.8 88 64.8
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 5.7e-24 115.2 112 46.4
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 7.4e-24 114.8 70 78.6
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.3e-23 114.0 75 73.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.3e-23 114.0 75 73.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.8e-23 112.8 67 76.1
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 4.8e-23 112.1 140 45.0
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 6.3e-23 111.7 56 91.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 4.1e-22 109.0 70 77.1
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.5e-21 107.1 59 83.1
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.0e-20 104.4 74 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 5.5e-19 98.6 133 38.3
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 9.4e-19 97.8 78 61.5
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.0e-17 94.4 61 75.4
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 4.8e-15 85.5 54 75.9
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 5.9e-13 78.6 52 71.2
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.9e-11 73.6 48 75.0
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.7e-07 60.5 58 50.0
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 6.3e-07 58.5 60 48.3
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.1e-06 56.2 48 56.2


User provided reference genes

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