Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.6e-60 233.8 114 100.0
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.6e-58 229.2 114 98.2
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.8e-57 225.7 114 96.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.1e-34 149.1 114 65.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.7e-34 147.9 118 66.9
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.1e-33 146.7 118 66.9
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.1e-33 146.7 118 66.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.6e-32 142.1 114 64.0
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 6.4e-31 137.5 116 60.3
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-30 136.7 113 60.2
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.7e-29 132.1 108 62.0
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.5e-29 131.7 109 61.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 4.6e-29 131.3 117 64.1
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-28 129.8 114 58.8
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.7e-28 129.4 107 60.7
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.3e-28 129.0 107 60.7
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.3e-28 129.0 114 57.9
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.3e-28 129.0 114 57.9
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.9e-28 128.3 111 62.2
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 5.1e-28 127.9 114 60.5
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 2.5e-27 125.6 117 59.0
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.3e-27 125.2 108 61.1
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 4.3e-27 124.8 117 57.3
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.3e-27 124.8 117 55.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 7.3e-27 124.0 120 55.8
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 7.3e-27 124.0 115 55.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 2.8e-26 122.1 117 59.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.8e-26 122.1 114 54.4
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.6e-26 121.7 112 56.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.7e-26 121.3 116 55.2
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.1e-26 120.6 114 57.0
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-25 120.2 117 58.1
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.1e-25 120.2 121 55.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 3.1e-25 118.6 115 55.7
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 8.9e-25 117.1 116 52.6
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.2e-24 116.7 115 53.9
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 4.4e-24 114.8 106 62.3
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.4e-24 114.8 114 55.3
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.6e-24 114.0 115 53.0
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.3e-23 113.2 116 54.3
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-23 113.2 102 60.8
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.4e-22 109.8 119 47.1
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.9e-22 109.4 101 60.4
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.4e-22 109.0 110 50.0
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.2e-22 108.6 116 52.6
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 9.3e-22 107.1 116 53.4
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.6e-21 106.3 114 49.1
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.3e-20 102.4 108 48.1
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.9e-20 101.7 102 52.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 8.7e-20 100.5 104 51.9
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 8.7e-20 100.5 104 51.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.9e-19 99.4 112 50.0
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 9.6e-19 97.1 107 48.6
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.3e-18 96.7 116 43.1
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.3e-18 96.7 116 41.4
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.1e-18 95.9 109 50.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.6e-18 95.1 106 51.9
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.8e-18 94.7 112 42.0
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 6.2e-18 94.4 105 51.4
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 8.1e-18 94.0 106 50.0
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.4e-17 93.2 118 43.2
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 1.4e-17 93.2 130 42.3
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.8e-17 92.8 111 42.3
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.8e-17 92.8 106 50.0
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.1e-17 92.0 106 50.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.3e-17 91.3 108 47.2
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 5.3e-17 91.3 107 48.6
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.6e-16 87.4 108 45.4
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 2.9e-15 85.5 112 43.8
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 6.4e-15 84.3 114 45.6
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 8.4e-15 84.0 110 45.5
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.4e-14 83.2 117 38.5
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.9e-14 82.8 113 41.6
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.4e-14 82.4 110 43.6
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.4e-14 82.4 110 44.5
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 3.2e-14 82.0 117 43.6
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.2e-14 82.0 111 45.9
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 4.2e-14 81.6 112 42.9
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 4.2e-14 81.6 117 42.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 7.1e-14 80.9 97 48.5
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.6e-13 79.7 121 38.0
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 3.5e-13 78.6 110 41.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.0e-13 77.8 113 38.1
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 7.9e-13 77.4 107 41.1
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.0e-12 77.0 110 42.7
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.0e-12 77.0 110 42.7
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.3e-12 76.6 104 45.2
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 2.3e-12 75.9 116 37.1
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.3e-12 75.9 114 40.4
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 3.0e-12 75.5 120 40.0
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 3.0e-12 75.5 111 41.4
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 3.9e-12 75.1 115 40.9
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 3.9e-12 75.1 108 39.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.1e-12 74.7 113 38.9
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.1e-12 74.7 108 39.8
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.1e-12 74.7 116 37.9
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 6.7e-12 74.3 110 38.2
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.9e-11 72.8 119 40.3
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.5e-11 72.4 116 35.3
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.5e-11 72.4 119 38.7
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-11 72.4 108 38.0
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.5e-11 72.4 110 42.7
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 3.3e-11 72.0 120 39.2
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 3.3e-11 72.0 120 39.2
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 3.3e-11 72.0 120 39.2
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 4.3e-11 71.6 109 37.6
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.3e-11 71.6 115 40.9
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.3e-11 71.6 115 40.9
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 4.3e-11 71.6 117 38.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 5.6e-11 71.2 112 41.1
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.6e-10 69.7 117 37.6
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.6e-10 69.7 130 36.9
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.8e-10 68.9 107 38.3
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 3.6e-10 68.6 115 41.7
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.8e-10 68.2 103 39.8
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.2e-10 67.8 104 37.5
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.1e-09 67.0 111 39.6
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.4e-09 66.6 128 37.5
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-09 66.6 112 34.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.8e-09 66.2 123 35.0
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 3.1e-09 65.5 73 45.2
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 4.0e-09 65.1 106 41.5
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.3e-09 64.7 110 36.4
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.3e-09 64.7 110 36.4
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.2e-08 63.5 133 33.8
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 2.0e-08 62.8 102 32.4
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 4.5e-08 61.6 107 30.8
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.6e-08 60.8 89 41.6
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 7.6e-08 60.8 108 32.4
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.6e-08 60.8 109 40.4
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 9.9e-08 60.5 104 33.7
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.9e-08 60.5 109 34.9
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 2.2e-07 59.3 93 37.6
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.9e-07 58.9 106 35.8
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.9e-07 58.2 108 33.3
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 6.4e-07 57.8 111 33.3
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 8.4e-07 57.4 109 34.9
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.4e-06 55.8 109 33.0
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 5.5e-06 54.7 108 33.3
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 9.3e-06 53.9 115 32.2


User provided reference genes

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