Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 0.0e+00 1290.0 641 100.0
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 0.0e+00 1280.4 641 98.1
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 3.4e-299 1031.2 642 79.4
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 2.6e-294 1015.0 646 78.8
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 1.1e-292 1009.6 580 81.6
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 3.8e-290 1001.1 578 81.8
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 1.1e-289 999.6 648 77.9
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 2.5e-289 998.4 644 76.7
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 4.7e-288 994.2 651 76.7
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 1.2e-283 979.5 653 76.4
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 2.3e-271 938.7 580 74.1
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 6.8e-271 937.2 593 74.7
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 8.8e-271 936.8 584 76.2
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 2.6e-270 935.3 590 74.1
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 5.7e-270 934.1 578 74.7
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 9.8e-270 933.3 586 75.1
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 1.3e-269 932.9 582 74.9
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 2.8e-269 931.8 596 74.5
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 3.7e-269 931.4 607 77.1
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 1.4e-268 929.5 586 73.7
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 4.1e-268 927.9 584 74.7
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 5.4e-268 927.5 577 74.2
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 9.1e-268 926.8 583 73.9
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 3.5e-267 924.9 582 74.1
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 4.5e-267 924.5 580 72.9
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 2.3e-266 922.2 581 74.2
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 3.8e-266 921.4 581 74.0
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 5.0e-266 921.0 582 73.2
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 1.9e-265 919.1 579 73.7
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 2.5e-265 918.7 591 73.1
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 3.2e-265 918.3 582 73.7
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 4.2e-265 917.9 582 73.0
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 9.5e-265 916.8 581 73.7
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 3.6e-264 914.8 576 74.1
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 6.1e-264 914.1 582 75.1
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 1.0e-263 913.3 581 73.1
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 1.0e-263 913.3 581 73.1
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 1.8e-263 912.5 580 73.8
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 3.0e-263 911.8 579 73.6
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 5.2e-263 911.0 581 73.8
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 6.8e-263 910.6 579 73.4
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 4.4e-262 907.9 594 71.7
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 7.0e-260 900.6 581 72.6
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 4.5e-259 897.9 588 71.4
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 3.3e-257 891.7 581 73.1
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 1.2e-256 889.8 581 72.8
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 2.1e-256 889.0 575 72.3
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 8.0e-256 887.1 581 72.6
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.0e-255 886.7 581 72.8
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.4e-255 886.3 581 73.0
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 3.0e-255 885.2 581 70.9
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 3.4e-254 881.7 580 70.7
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 4.4e-254 881.3 580 70.9
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 4.4e-254 881.3 618 67.8
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 7.5e-254 880.6 580 70.7
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 9.8e-254 880.2 577 71.4
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 9.8e-254 880.2 607 68.7
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 1.4e-252 876.3 663 64.0
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 5.4e-252 874.4 580 70.3
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 7.0e-252 874.0 581 70.7
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 5.9e-251 870.9 574 69.9
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 1.9e-249 865.9 580 69.5
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 5.6e-249 864.4 586 69.5
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 9.5e-249 863.6 574 70.6
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 1.1e-247 860.1 584 69.7
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 2.2e-245 852.4 583 68.8
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 5.4e-244 847.8 582 68.4
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 4.6e-243 844.7 537 72.1
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 6.0e-243 844.3 579 69.8
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 6.0e-243 844.3 588 68.5
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 5.6e-241 837.8 582 67.5
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 9.5e-241 837.0 582 67.7
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 2.9e-237 825.5 582 68.2
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 1.2e-235 820.1 579 68.2
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 1.0e-234 817.0 579 68.2
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 3.0e-234 815.5 581 67.0
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 6.6e-234 814.3 582 67.9
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 4.7e-232 808.1 587 66.4
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 1.2e-230 803.5 578 66.6
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 7.6e-230 800.8 590 66.4
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 2.2e-229 799.3 590 66.6
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 3.2e-228 795.4 591 66.5
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 3.2e-228 795.4 591 66.5
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 3.5e-227 792.0 589 66.2
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 9.6e-225 783.9 539 68.1
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 1.6e-224 783.1 556 65.8
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 6.2e-224 781.2 587 65.9
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 1.5e-222 776.5 581 65.1
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 7.1e-220 767.7 585 63.4
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 7.4e-209 731.1 618 60.2
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 2.2e-205 719.5 573 60.9
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 6.4e-205 718.0 580 58.8
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 8.2e-192 674.5 587 58.8
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 5.5e-188 661.8 558 57.9
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 4.3e-185 652.1 591 55.2
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 2.2e-184 649.8 579 56.3
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 2.3e-178 629.8 477 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 3.0e-178 629.4 592 54.2
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 7.0e-175 618.2 596 54.4
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 3.8e-165 585.9 578 50.9
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 2.3e-162 576.6 374 69.3
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 3.5e-126 456.4 517 48.2
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 2.7e-118 430.3 256 76.2
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 1.8e-93 347.8 210 77.1
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 7.4e-76 289.3 190 72.6
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 3.8e-64 250.4 195 60.0
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 8.0e-54 216.1 220 52.3
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 3.8e-48 197.2 107 81.3
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 2.5e-39 167.9 133 58.6
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 2.6e-28 131.3 65 87.7
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 4.1e-26 124.0 65 84.6
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 1.6e-25 122.1 80 71.2
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 5.9e-25 120.2 101 53.5
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 4.7e-22 110.5 77 70.1
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 1.4e-13 82.4 37 97.3
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.5e-12 79.0 43 79.1
Lsat_1_v5_gn_8_142581 Lactuca sativa HOM05D006696 ORTHO05D030753 1.3e-11 75.9 83 50.6
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 9.2e-10 69.7 39 76.9


User provided reference genes

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