Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.9e-266 921.4 486 100.0
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 7.9e-163 577.8 322 99.4
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 3.1e-143 512.7 296 87.5
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.2e-141 506.5 296 86.5
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.9e-141 506.1 296 86.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.4e-138 497.3 295 84.4
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 6.7e-138 495.0 326 79.1
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 6.7e-138 495.0 296 84.1
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.5e-137 493.8 297 83.5
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 6.5e-133 478.4 296 80.7
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 1.2e-129 467.6 296 77.7
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.4e-119 434.1 307 72.6
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.1e-115 420.2 298 71.5
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 8.0e-115 418.3 408 57.4
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 2.3e-114 416.8 300 72.7
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 2.6e-113 413.3 300 71.7
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 4.4e-113 412.5 302 70.9
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 4.5e-110 402.5 345 62.9
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.9e-110 402.1 300 69.7
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.9e-110 402.1 300 69.7
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 7.8e-110 401.7 300 69.7
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.3e-109 400.2 353 63.5
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.9e-109 399.8 300 68.0
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.9e-109 399.8 298 69.5
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 3.8e-109 399.4 300 69.7
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.5e-108 397.5 304 68.8
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.6e-108 395.6 333 64.0
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.6e-107 394.0 305 66.6
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.8e-107 393.3 299 68.2
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-106 391.3 305 67.2
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.5e-105 387.5 300 66.3
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 2.0e-105 387.1 299 66.9
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.4e-105 386.0 298 68.1
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 5.7e-105 385.6 297 68.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.7e-105 385.6 300 65.7
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 1.3e-104 384.4 299 66.6
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 4.9e-104 382.5 298 65.4
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.1e-103 381.3 299 66.6
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.1e-103 381.3 300 67.3
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.1e-103 381.3 300 67.0
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 1.1e-103 381.3 358 59.8
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 2.4e-103 380.2 300 65.3
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.2e-103 379.8 299 65.6
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.4e-103 379.0 303 66.0
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 4.6e-102 375.9 298 67.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 7.8e-102 375.2 298 64.8
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.0e-101 373.2 299 66.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 8.6e-101 371.7 298 63.4
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 5.6e-100 369.0 329 60.5
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 5.6e-100 369.0 299 65.2
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 9.5e-100 368.2 298 62.8
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 9.5e-100 368.2 347 57.6
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.6e-99 367.5 299 66.2
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.1e-99 367.1 302 63.2
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.8e-99 366.7 298 64.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.2e-99 365.5 334 61.4
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 8.0e-99 365.2 330 60.0
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 3.1e-98 363.2 278 67.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 4.0e-98 362.8 330 60.3
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 4.0e-98 362.8 302 62.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 4.0e-98 362.8 350 56.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 5.2e-98 362.5 329 59.6
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.2e-98 362.5 280 68.2
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 6.8e-98 362.1 330 60.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.8e-98 362.1 329 59.9
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.2e-97 361.3 330 60.0
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.2e-97 361.3 304 60.2
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.5e-97 360.9 329 59.6
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.0e-97 360.5 297 63.0
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 2.6e-97 360.1 297 63.6
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 4.4e-97 359.4 298 64.4
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.4e-97 359.4 276 68.1
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.8e-97 359.0 299 62.2
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 7.5e-97 358.6 329 59.3
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.4e-95 354.4 300 61.7
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.9e-95 354.0 300 61.0
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 3.2e-95 353.2 298 61.1
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 2.0e-94 350.5 341 57.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 3.5e-94 349.7 300 61.3
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.7e-93 347.4 323 58.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.7e-93 347.4 304 60.9
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.3e-93 347.1 292 61.6
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 3.9e-93 346.3 301 60.1
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 6.6e-93 345.5 301 61.1
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 6.6e-93 345.5 297 62.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.5e-92 344.4 332 57.8
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.5e-92 344.4 332 57.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.9e-92 344.0 283 64.7
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.3e-92 343.2 332 57.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 7.3e-92 342.0 299 59.9
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 9.5e-92 341.7 286 64.3
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 2.8e-91 340.1 332 57.2
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.1e-90 338.2 294 60.2
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.1e-90 338.2 283 62.5
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 4.9e-88 329.3 332 56.3
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 4.9e-88 329.3 376 50.8
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 2.1e-86 323.9 355 52.7
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 7.8e-86 322.0 306 57.5
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.7e-85 320.9 307 56.4
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.1e-85 319.3 308 57.5
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.5e-84 317.0 308 57.1
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 3.3e-84 316.6 290 57.2
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 4.6e-78 296.2 281 56.2
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 7.8e-78 295.4 299 52.2
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.0e-77 293.5 230 67.4
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 8.7e-77 292.0 308 53.9
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 3.4e-73 280.0 330 49.7
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 5.8e-65 252.7 208 62.5
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 3.2e-63 246.9 232 58.2
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 8.2e-51 205.7 126 80.2
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.0e-49 201.1 331 40.5
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.7e-48 198.0 316 39.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.6e-46 189.9 125 74.4
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.2e-43 181.0 313 36.7
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 6.3e-43 179.5 125 68.8
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 8.2e-35 152.5 117 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 3.8e-32 143.7 318 34.0
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 4.8e-27 126.7 141 49.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 4.1e-26 123.6 88 69.3
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.5e-23 114.4 90 65.6
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.4e-21 108.6 79 69.6
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 4.4e-20 103.6 104 56.7
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 7.4e-20 102.8 71 71.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.8e-13 81.6 153 39.9
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.7e-09 67.8 92 39.1
TAR633G1840 Trochodendron aralioides HOM05D005892 ORTHO05D415453 8.5e-08 62.8 88 40.9


User provided reference genes

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