Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 3.3e-167 591.7 301 100.0
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 6.0e-129 464.5 301 81.7
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.3e-115 420.2 291 73.2
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 8.5e-115 417.5 291 71.1
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 6.1e-113 411.4 291 71.1
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 3.3e-111 405.6 291 70.8
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 7.4e-111 404.4 291 70.8
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 2.7e-105 386.0 284 69.7
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 2.2e-94 349.7 290 62.1
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 3.7e-94 349.0 285 61.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 8.2e-94 347.8 283 63.3
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 4.1e-93 345.5 236 74.6
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 7.0e-93 344.7 281 64.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 7.0e-93 344.7 280 62.5
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.3e-91 340.5 284 59.9
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.5e-91 337.8 280 60.7
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.1e-90 337.4 280 60.7
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 9.4e-90 334.3 285 58.9
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 9.4e-90 334.3 282 59.9
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 9.4e-90 334.3 282 61.3
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.6e-89 333.6 285 59.6
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.7e-89 332.8 282 60.6
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.6e-89 332.4 283 57.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 4.7e-89 332.0 285 58.9
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.0e-88 330.9 279 60.2
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 3.0e-88 329.3 283 57.6
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.0e-88 329.3 283 58.3
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 3.0e-88 329.3 288 59.0
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.2e-88 328.6 193 82.4
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 6.7e-88 328.2 281 56.9
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 2.6e-87 326.2 286 57.7
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 3.3e-87 325.9 283 58.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.3e-87 325.9 282 58.5
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 4.4e-87 325.5 281 57.7
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 4.4e-87 325.5 279 58.8
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 4.4e-87 325.5 283 57.2
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.3e-86 323.9 284 57.0
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.7e-86 323.6 286 57.3
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.7e-86 323.6 285 57.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 2.8e-86 322.8 283 57.6
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 4.8e-86 322.0 287 57.1
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.3e-86 321.6 282 57.8
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.3e-86 321.6 282 57.8
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 6.3e-86 321.6 283 57.6
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.8e-85 320.1 282 56.0
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.8e-85 320.1 287 57.8
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 3.1e-85 319.3 283 56.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 3.1e-85 319.3 283 56.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 7.0e-85 318.2 286 56.3
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 7.0e-85 318.2 283 55.5
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.6e-84 317.0 299 55.5
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.0e-84 316.6 284 56.0
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 5.9e-84 315.1 286 55.6
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 5.9e-84 315.1 284 57.7
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.3e-83 313.9 284 57.4
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.3e-83 313.9 282 56.7
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.7e-83 313.5 284 57.0
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.7e-83 313.5 282 56.4
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.1e-82 310.8 281 58.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.5e-82 310.5 280 55.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.7e-81 306.2 286 55.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 6.1e-81 305.1 283 57.6
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.5e-79 300.4 280 53.6
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 2.0e-79 300.1 266 57.1
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.4e-79 299.3 283 55.5
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.4e-79 298.9 309 52.4
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.8e-78 296.2 285 53.7
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 6.3e-78 295.0 279 54.1
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 6.3e-78 295.0 280 54.6
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 9.1e-77 291.2 283 53.7
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 1.2e-76 290.8 279 52.3
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.3e-75 286.6 254 57.9
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.5e-74 283.1 236 63.6
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.5e-74 283.1 350 44.9
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 3.3e-74 282.7 284 51.8
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 3.3e-74 282.7 233 59.7
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-73 280.8 227 59.0
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 2.1e-73 280.0 282 51.8
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.6e-73 279.3 283 51.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 6.1e-73 278.5 284 51.8
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.4e-72 277.3 255 56.5
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 3.0e-72 276.2 284 51.1
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 8.9e-72 274.6 254 55.5
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 8.9e-72 274.6 314 47.8
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.3e-70 270.8 283 51.2
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.3e-70 270.8 290 51.7
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 2.5e-66 256.5 293 46.4
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 5.6e-66 255.4 184 71.2
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.2e-65 254.2 230 58.3
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.4e-63 245.7 291 48.1
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 1.4e-56 224.2 217 55.8
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.2e-55 221.1 258 48.4
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.5e-55 218.4 173 61.8
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.3e-54 217.6 199 57.3
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 2.4e-53 213.4 243 44.0
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 8.6e-51 204.9 287 38.0
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 3.3e-50 203.0 290 37.9
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-49 201.1 176 56.2
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.6e-49 200.7 281 40.9
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.1e-48 198.0 280 41.1
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 8.3e-46 188.3 186 52.7
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.8e-40 170.6 129 61.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 3.1e-40 169.9 254 38.2
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 4.0e-40 169.5 282 37.6
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 6.4e-38 162.2 120 62.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.5e-34 151.0 95 72.6
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 7.3e-34 148.7 191 47.1
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.6e-33 147.5 96 69.8
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 1.4e-32 144.4 176 47.2
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 3.1e-32 143.3 89 75.3
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 7.6e-31 138.7 96 65.6
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 4.2e-29 132.9 96 66.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 7.1e-29 132.1 183 40.4
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 7.8e-28 128.6 94 61.7
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.1e-25 120.6 90 61.1
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.5e-23 112.8 81 63.0
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 4.9e-22 109.4 179 31.8
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 3.0e-19 100.1 67 62.7
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 5.1e-19 99.4 162 35.2
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 6.7e-19 99.0 67 67.2
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 6.2e-17 92.4 71 63.4
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-12 76.6 55 58.2
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 4.6e-12 76.3 82 45.1
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.0e-11 75.1 72 52.8
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.8e-11 74.3 60 60.0
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 9.6e-10 68.6 87 46.0
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 9.6e-10 68.6 52 53.8
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-09 65.9 58 53.4
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 4.9e-06 56.2 87 39.1


User provided reference genes

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