Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P96IG1 Arachis hypogaea HOM05D002764 ORTHO05D002960 2.1e-80 302.4 156 100.0
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 2.9e-58 228.8 154 79.2
arahy.Tifrunner.gnm1.ann1.25YVJA Arachis hypogaea HOM05D002764 ORTHO05D002960 4.9e-50 201.4 123 84.6
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 1.3e-45 186.8 103 92.2
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea HOM05D002764 ORTHO05D002960 1.3e-45 186.8 103 92.2
arahy.Tifrunner.gnm1.ann1.EUP4KI Arachis hypogaea HOM05D002764 ORTHO05D002960 1.6e-40 169.9 135 67.4
Lj4g0007006 Lotus japonicus HOM05D002764 ORTHO05D002960 8.7e-39 164.1 103 77.7
Psat4g112480 Pisum sativum HOM05D002764 ORTHO05D002960 1.5e-38 163.3 103 76.7
TPR.G19832 Trifolium pratense HOM05D002764 ORTHO05D002960 2.5e-38 162.5 103 77.7
VMungo0251G1067 Vigna mungo HOM05D002764 ORTHO05D002960 5.7e-38 161.4 103 75.7
Phvul.003G274500 Phaseolus vulgaris HOM05D002764 ORTHO05D002960 7.4e-38 161.0 103 75.7
Medtr8g070640 Medicago truncatula HOM05D002764 ORTHO05D002960 1.3e-37 160.2 103 76.7
Glyma.16G094500 Glycine max HOM05D002764 ORTHO05D002960 2.8e-37 159.1 103 75.7
Gohir.A12G051200 Gossypium hirsutum HOM05D002764 ORTHO05D002960 8.2e-37 157.5 103 76.7
Gohir.D12G049400 Gossypium hirsutum HOM05D002764 ORTHO05D002960 1.1e-36 157.1 103 76.7
Gorai.008G052300 Gossypium raimondii HOM05D002764 ORTHO05D002960 1.1e-36 157.1 103 76.7
Lalb_Chr16g0391871 Lupinus albus HOM05D002764 ORTHO05D002960 3.1e-36 155.6 103 72.8
Glyma.08G264402 Glycine max HOM05D002764 ORTHO05D002960 5.3e-36 154.8 103 74.8
Duzib248G0661 Durio zibethinus HOM05D002764 ORTHO05D002960 2.0e-35 152.9 103 73.8
COL.COLO4_25012 Corchorus olitorius HOM05D002764 ORTHO05D002960 2.6e-35 152.5 103 74.8
Thecc.02G000300 Theobroma cacao HOM05D002764 ORTHO05D002960 3.4e-35 152.1 103 71.8
FAN11G2045 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.3e-34 150.2 103 70.9
RcHm_v2.0_Chr5g0022461 Rosa chinensis HOM05D002764 ORTHO05D002960 1.3e-34 150.2 103 71.8
Ciclev10015913m.g Citrus clementina HOM05D002764 ORTHO05D002960 1.7e-34 149.8 103 69.9
FAN21G1338 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.7e-34 149.8 103 70.9
Dinv05281 Davidia involucrata HOM05D002764 ORTHO05D002960 2.9e-34 149.1 103 70.9
FAN25G1120 Fragaria x ananassa HOM05D002764 ORTHO05D002960 2.9e-34 149.1 102 71.6
ATR0737G018 Amborella trichopoda HOM05D002764 ORTHO05D002960 6.5e-34 147.9 103 68.9
Haze_05179 Corylus avellana HOM05D002764 ORTHO05D002960 6.5e-34 147.9 103 71.8
Cfa001171 Carpinus fangiana HOM05D002764 ORTHO05D002960 8.5e-34 147.5 103 69.9
Manes.16G060600 Manihot esculenta HOM05D002764 ORTHO05D002960 8.5e-34 147.5 103 70.9
FAN16G2462 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.1e-33 147.1 103 69.9
TAR627G0266 Trochodendron aralioides HOM05D002764 ORTHO05D002960 1.9e-33 146.4 103 68.9
CDE10G0875 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 4.2e-33 145.2 103 66.0
FvH4_3g13510 Fragaria vesca HOM05D002764 ORTHO05D002960 4.2e-33 145.2 103 68.9
ATR0721G170 Amborella trichopoda HOM05D002764 ORTHO05D002960 5.5e-33 144.8 103 67.0
Hund21012 Selenicereus undatus HOM05D002764 ORTHO05D002960 5.5e-33 144.8 103 67.0
GSVIVG01011697001 Vitis vinifera HOM05D002764 ORTHO05D002960 9.4e-33 144.1 103 68.9
Aqoxy2G00386 Aquilegia oxysepala HOM05D002764 ORTHO05D002960 2.1e-32 142.9 103 66.0
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla HOM05D002764 ORTHO05D002960 2.1e-32 142.9 103 68.9
Lj2A340G20 Lonicera japonica HOM05D002764 ORTHO05D002960 2.1e-32 142.9 103 69.9
Potri.003G157700 Populus trichocarpa HOM05D002764 ORTHO05D002960 2.7e-32 142.5 103 67.0
Rhsim13G0136800 Rhododendron simsii HOM05D002764 ORTHO05D002960 2.7e-32 142.5 103 67.0
Sabra01G0051700 Salix brachista HOM05D002764 ORTHO05D002960 4.6e-32 141.7 101 67.3
EL10Ac6g13754 Beta vulgaris HOM05D002764 ORTHO05D002960 6.1e-32 141.4 106 63.2
CiPaw.09G141200 Carya illinoinensis HOM05D002764 ORTHO05D002960 6.1e-32 141.4 103 68.0
AUR62007725 Chenopodium quinoa HOM05D002764 ORTHO05D002960 6.1e-32 141.4 106 63.2
Potri.001G073300 Populus trichocarpa HOM05D002764 ORTHO05D002960 7.9e-32 141.0 101 67.3
Sed0003310 Sechium edule HOM05D002764 ORTHO05D002960 7.9e-32 141.0 103 68.0
vmacro03577 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 1.8e-31 139.8 103 66.0
HPP92_005201 Vanilla planifolia HOM05D002764 ORTHO05D002960 2.3e-31 139.4 106 62.3
AUR62026563 Chenopodium quinoa HOM05D002764 ORTHO05D002960 3.0e-31 139.0 106 62.3
CsaV3_6G053200 Cucumis sativus L. HOM05D002764 ORTHO05D002960 3.9e-31 138.7 103 67.0
Prupe.4G123300 Prunus persica HOM05D002764 ORTHO05D002960 6.7e-31 137.9 103 68.0
Lsat_1_v5_gn_8_107580 Lactuca sativa HOM05D002764 ORTHO05D002960 1.1e-30 137.1 103 65.0
DCAR_007770 Daucus carota HOM05D002764 ORTHO05D002960 2.0e-30 136.3 103 60.2
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 2.0e-30 136.3 103 67.0
Migut.N01903 Erythranthe guttata HOM05D002764 ORTHO05D002960 2.0e-30 136.3 103 65.0
Sc25g0004730 Simmondsia chinensis HOM05D002764 ORTHO05D002960 2.0e-30 136.3 103 64.1
CSS0002485 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 2.5e-30 136.0 102 66.7
PSO063G4440 Papaver somniferum HOM05D002764 ORTHO05D002960 4.3e-30 135.2 103 62.1
TWI15G1089 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 4.3e-30 135.2 103 66.0
TWI38G0493 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 4.3e-30 135.2 103 65.0
Ah.03g132240 Amaranthus hybridus HOM05D002764 ORTHO05D002960 7.4e-30 134.4 109 61.5
Eucgr.E04332 Eucalyptus grandis HOM05D002764 ORTHO05D002960 1.3e-29 133.7 103 60.2
PSO782G1036 Papaver somniferum HOM05D002764 ORTHO05D002960 1.3e-29 133.7 103 61.2
THA.LOC104814331 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 1.3e-29 133.7 103 59.2
Cc09_g04490 Coffea canephora HOM05D002764 ORTHO05D002960 1.7e-29 133.3 100 68.0
HanXRQChr09g0257691 Helianthus annuus HOM05D002764 ORTHO05D002960 1.7e-29 133.3 103 65.0
Zm00001eb116800 Zea mays HOM05D002764 ORTHO05D002960 1.7e-29 133.3 101 61.4
THA.LOC104798576 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 3.7e-29 132.1 103 60.2
PGR042G3469 Punica granatum HOM05D002764 ORTHO05D002960 4.8e-29 131.7 103 61.2
Solyc11g068610.2 Solanum lycopersicum HOM05D002764 ORTHO05D002960 6.3e-29 131.3 100 65.0
Sopen11g027330 Solanum pennellii HOM05D002764 ORTHO05D002960 6.3e-29 131.3 100 65.0
MD10G1221300 Malus domestica HOM05D002764 ORTHO05D002960 8.2e-29 131.0 103 62.1
BcaB07g32735 Brassica carinata HOM05D002764 ORTHO05D002960 1.4e-28 130.2 101 61.4
BcaC05g27107 Brassica carinata HOM05D002764 ORTHO05D002960 1.4e-28 130.2 101 61.4
A09p35450 Brassica napus HOM05D002764 ORTHO05D002960 1.4e-28 130.2 101 61.4
C05p29900 Brassica napus HOM05D002764 ORTHO05D002960 1.4e-28 130.2 101 61.4
BolC5t31722H Brassica oleracea HOM05D002764 ORTHO05D002960 1.4e-28 130.2 101 61.4
BraA09t39073Z Brassica rapa HOM05D002764 ORTHO05D002960 1.4e-28 130.2 101 61.4
CANSAT35G1062 Cannabis sativa HOM05D002764 ORTHO05D002960 1.4e-28 130.2 108 60.2
Nitab4.5_0004266g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 1.4e-28 130.2 100 64.0
CAN.G745.4 Capsicum annuum HOM05D002764 ORTHO05D002960 1.8e-28 129.8 100 62.0
PGSC0003DMG400026351 Solanum tuberosum HOM05D002764 ORTHO05D002960 1.8e-28 129.8 100 64.0
BcaB03g13812 Brassica carinata HOM05D002764 ORTHO05D002960 4.1e-28 128.6 101 60.4
Peaxi162Scf00040g00214 Petunia axillaris HOM05D002764 ORTHO05D002960 4.1e-28 128.6 100 63.0
A07p09600 Brassica napus HOM05D002764 ORTHO05D002960 5.3e-28 128.3 101 60.4
BolC7t41980H Brassica oleracea HOM05D002764 ORTHO05D002960 5.3e-28 128.3 101 60.4
BraA07t28755Z Brassica rapa HOM05D002764 ORTHO05D002960 5.3e-28 128.3 101 60.4
Sp1g26720 Schrenkiella parvula HOM05D002764 ORTHO05D002960 5.3e-28 128.3 101 60.4
ClCG01G025980 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.2e-27 127.1 156 49.4
C07p14780 Brassica napus HOM05D002764 ORTHO05D002960 1.5e-27 126.7 101 59.4
Thhalv10008211m.g Eutrema salsugineum HOM05D002764 ORTHO05D002960 1.5e-27 126.7 101 59.4
SEGI_18231 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 2.0e-27 126.3 103 56.3
Nn1g09845 Nelumbo nucifera HOM05D002764 ORTHO05D002960 4.5e-27 125.2 140 49.3
Nitab4.5_0006120g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 1.3e-26 123.6 103 62.1
MSTRG.28023 Avicennia marina HOM05D002764 ORTHO05D002960 3.8e-26 122.1 103 56.3
Sabra03G0114300 Salix brachista HOM05D002764 ORTHO05D002960 3.8e-26 122.1 137 50.4
SHI16745 Sapria himalayana HOM05D002764 ORTHO05D002960 5.0e-26 121.7 103 59.2
AL1G45080 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 6.5e-26 121.3 101 58.4
AT1G30825 Arabidopsis thaliana HOM05D002764 ORTHO05D002960 6.5e-26 121.3 101 58.4
Carub.0001s2914 Capsella rubella HOM05D002764 ORTHO05D002960 6.5e-26 121.3 101 58.4
CARHR030300 Cardamine hirsuta HOM05D002764 ORTHO05D002960 6.5e-26 121.3 101 58.4
Pp3c14_19930 Physcomitrium patens HOM05D002764 ORTHO05D002960 5.5e-25 118.2 127 47.2
SalBow4G2392 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.2e-24 117.1 116 50.0
SalBow4G2049 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.6e-24 116.7 116 50.0
SMO118G0168 Selaginella moellendorffii HOM05D002764 ORTHO05D002960 1.6e-24 116.7 103 56.3
DCAR_004367 Daucus carota HOM05D002764 ORTHO05D002960 2.7e-24 115.9 100 57.0
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.0e-23 114.0 103 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis HOM05D002764 ORTHO05D002960 2.3e-23 112.8 103 49.5
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis HOM05D002764 ORTHO05D002960 3.0e-23 112.5 103 47.6
Pp3c1_32330 Physcomitrium patens HOM05D002764 ORTHO05D002960 6.7e-23 111.3 102 50.0
SGA_v2.0_scaffold263G46025 Striga asiatica HOM05D002764 ORTHO05D002960 1.1e-22 110.5 98 57.1
Aa31LG6G12060 Aethionema arabicum HOM05D002764 ORTHO05D002960 2.0e-22 109.8 141 41.8
Mapoly0019s0138 Marchantia polymorpha HOM05D002764 ORTHO05D002960 4.4e-22 108.6 100 49.0
MELO3C006994.2 Cucumis melo HOM05D002764 ORTHO05D002960 5.7e-22 108.2 169 40.8
RcHm_v2.0_Chr6g0246611 Rosa chinensis HOM05D002764 ORTHO05D002960 1.3e-21 107.1 84 71.4
SEGI_02118 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 2.2e-21 106.3 99 51.5
RcHm_v2.0_Chr6g0255501 Rosa chinensis HOM05D002764 ORTHO05D002960 8.5e-18 94.4 69 71.0
CDE10G1113 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 1.8e-15 86.7 103 44.7
Oeu021869.2 Olea europaea HOM05D002764 ORTHO05D002960 1.5e-14 83.6 191 30.9
QL11p010613 Quercus lobata HOM05D002764 ORTHO05D002960 2.2e-13 79.7 80 60.0
RcHm_v2.0_Chr2g0116291 Rosa chinensis HOM05D002764 ORTHO05D002960 2.2e-13 79.7 67 61.2
RcHm_v2.0_Chr1g0328971 Rosa chinensis HOM05D002764 ORTHO05D002960 6.3e-13 78.2 55 72.7
CBR_g9158 Chara braunii HOM05D002764 ORTHO05D002960 1.4e-12 77.0 114 31.6
Ca_22537_v3 Cicer arietinum L. HOM05D002764 ORTHO05D002960 1.4e-12 77.0 75 56.0
RcHm_v2.0_Chr6g0255481 Rosa chinensis HOM05D002764 ORTHO05D002960 5.3e-12 75.1 57 70.2
QL11p010611 Quercus lobata HOM05D002764 ORTHO05D002960 9.1e-12 74.3 59 59.3
CAN.G1213.3 Capsicum annuum HOM05D002764 ORTHO05D002960 2.9e-10 69.3 57 57.9
Cpa.g.sc30.58 Carica papaya HOM05D002764 ORTHO05D002960 9.4e-09 64.3 43 65.1
ATR0736G098 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.6e-08 63.5 124 32.3
DCAR_024283 Daucus carota HOM05D002764 ORTHO05D002960 2.7e-08 62.8 98 33.7
MBI07_g18712_MAGBIO Magnolia biondii HOM05D002764 ORTHO05D002960 3.6e-08 62.4 99 33.3
Oeu026618.1 Olea europaea HOM05D002764 ORTHO05D002960 1.4e-07 60.5 101 27.7
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.8e-07 60.1 115 31.3
Actinidia11363 Actinidia chinensis HOM05D002764 ORTHO05D002960 5.2e-07 58.5 99 27.3
vmacro15471 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 6.7e-07 58.2 104 27.9
Psat6g106400 Pisum sativum HOM05D002764 ORTHO05D002960 1.5e-06 57.0 99 33.3
Potri.010G067100 Populus trichocarpa HOM05D002764 ORTHO05D002960 2.6e-06 56.2 104 27.9
Manes.03G160300 Manihot esculenta HOM05D002764 ORTHO05D002960 3.3e-06 55.8 92 32.6
arahy.Tifrunner.gnm1.ann1.4IN326 Arachis hypogaea HOM05D002764 ORTHO05D002960 4.4e-06 55.5 104 32.7
Sabra10G0040400 Salix brachista HOM05D002764 ORTHO05D002960 5.7e-06 55.1 104 27.9
Nn3g19748 Nelumbo nucifera HOM05D002764 ORTHO05D002960 7.5e-06 54.7 126 26.2
TAR362G0649 Trochodendron aralioides HOM05D002764 ORTHO05D002960 9.7e-06 54.3 126 27.8


User provided reference genes

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