Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.1e-282 974.9 452 100.0
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 9.6e-280 966.1 452 98.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.3e-232 808.1 425 86.1
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.3e-231 806.2 425 85.9
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 8.5e-228 793.5 438 83.3
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 4.2e-227 791.2 442 82.6
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 6.7e-225 783.9 428 83.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.7e-223 779.2 439 80.4
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.7e-223 779.2 435 80.7
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.2e-223 778.9 427 81.7
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.3e-222 774.2 425 79.5
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.8e-220 768.1 420 80.0
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.1e-219 766.5 444 77.3
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 5.5e-219 764.2 436 78.4
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 9.4e-219 763.5 425 79.1
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 9.4e-219 763.5 446 77.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.2e-218 763.1 425 79.1
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 6.1e-218 760.8 425 80.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 3.0e-217 758.4 425 79.1
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.5e-216 756.1 425 78.6
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 2.0e-216 755.7 425 78.4
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.7e-215 752.7 426 77.7
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.7e-215 752.7 429 77.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.7e-215 751.5 438 76.5
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 6.3e-215 750.7 426 77.7
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.3e-215 750.4 434 76.0
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.1e-214 750.0 442 77.4
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 3.1e-214 748.4 425 78.6
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.1e-214 748.4 425 77.9
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.1e-214 748.0 438 76.0
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.2e-213 746.5 447 75.6
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.5e-213 744.6 426 76.8
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 7.7e-213 743.8 425 76.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.3e-212 743.0 452 74.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.7e-212 742.7 478 70.9
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.8e-212 741.5 437 76.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.2e-210 736.5 425 77.4
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 3.6e-210 734.9 425 76.9
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.8e-209 732.6 436 74.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.8e-209 732.6 436 74.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.8e-209 732.6 425 75.8
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.5e-208 729.6 425 75.3
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 4.4e-208 728.0 444 73.9
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.7e-207 726.1 425 75.8
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.2e-207 725.7 452 72.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.8e-207 725.3 436 74.3
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.9e-207 724.5 454 73.1
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 6.3e-207 724.2 429 74.6
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 6.3e-207 724.2 425 74.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 8.3e-207 723.8 425 74.8
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.1e-206 721.8 473 70.6
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.2e-205 719.9 425 75.5
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.0e-205 719.2 425 73.9
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.7e-204 716.1 426 73.7
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 3.8e-204 714.9 425 74.1
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 8.6e-204 713.8 429 75.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.5e-203 713.0 425 74.8
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 4.3e-203 711.4 434 71.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.6e-203 711.1 417 76.0
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.6e-203 711.1 425 74.4
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.6e-203 711.1 425 74.4
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.2e-202 709.9 430 73.3
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 6.1e-202 707.6 449 70.2
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 8.0e-202 707.2 427 73.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 8.0e-202 707.2 445 71.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.0e-201 706.8 455 70.8
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.8e-201 706.1 428 72.9
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.8e-201 706.1 428 72.9
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 3.0e-201 705.3 425 73.6
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 8.9e-201 703.7 450 69.8
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 8.9e-201 703.7 436 71.1
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.2e-200 703.4 445 71.0
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.5e-200 703.0 443 71.8
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 2.0e-200 702.6 449 69.3
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.0e-200 702.6 435 70.3
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.4e-200 701.8 443 71.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.4e-200 701.4 433 72.7
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 4.4e-200 701.4 445 70.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.3e-199 699.9 444 71.8
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.9e-199 698.7 440 69.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 4.9e-199 698.0 430 71.6
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 6.4e-199 697.6 440 69.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 8.3e-199 697.2 426 72.8
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 8.3e-199 697.2 427 73.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 3.2e-198 695.3 441 71.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 7.8e-197 690.6 380 82.4
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 7.8e-197 690.6 380 82.4
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.7e-194 681.4 422 72.0
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.8e-193 679.5 432 69.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.2e-192 676.8 425 69.4
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 9.2e-190 667.2 425 69.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-189 666.8 379 80.7
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 4.6e-189 664.8 425 69.4
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 3.9e-188 661.8 366 78.4
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.0e-185 651.7 462 63.6
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.0e-184 649.4 432 70.1
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 7.5e-184 647.5 510 59.4
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 8.3e-183 644.0 366 77.6
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.3e-179 631.7 440 67.5
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 7.3e-179 630.9 378 73.8
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 7.3e-179 630.9 426 68.8
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.5e-179 630.6 425 63.3
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 2.9e-175 619.0 428 69.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 1.2e-170 603.6 351 76.6
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.6e-170 602.1 353 76.5
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 2.4e-169 599.4 425 65.6
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.6e-168 595.9 425 64.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.7e-164 583.2 403 67.7
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.9e-163 579.7 325 77.5
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.1e-162 576.2 518 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 6.9e-161 571.2 418 62.7
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 7.9e-157 557.8 429 66.0
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.5e-155 553.5 432 60.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.6e-154 550.1 427 57.6
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.0e-145 518.8 426 56.3
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.4e-142 510.4 396 57.1
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 4.1e-137 492.3 321 67.0
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 5.7e-131 471.9 269 77.3
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 6.9e-129 464.9 427 53.2
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-123 447.6 256 78.5
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.8e-100 370.5 216 72.2
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 8.8e-100 368.2 457 41.6
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.8e-83 311.6 184 73.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 3.5e-72 276.6 156 78.8
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 9.5e-70 268.5 424 40.3
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.8e-64 248.8 148 72.3
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.1e-60 236.9 352 37.5
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 3.5e-56 223.4 132 76.5
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.5e-56 223.4 126 77.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.9e-52 209.1 118 78.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.9e-51 205.3 110 80.0
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.3e-49 198.7 148 57.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.4e-43 180.3 111 73.0
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 4.5e-43 179.9 185 54.6
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.4e-42 175.6 185 49.2
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.9e-36 156.0 124 59.7
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 6.1e-16 89.7 60 63.3
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-14 85.5 54 64.8
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 9.4e-09 65.9 41 63.4


User provided reference genes

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