Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-190 669.8 338 100.0
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-190 669.8 338 100.0
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-190 669.8 338 100.0
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.3e-185 652.1 338 96.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 6.7e-185 650.6 338 96.2
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 8.7e-185 650.2 338 95.9
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.5e-184 648.7 335 97.0
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 4.3e-184 647.9 338 95.6
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.3e-183 646.4 338 94.7
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 6.9e-182 640.6 334 95.5
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 9.0e-182 640.2 337 94.7
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 4.5e-181 637.9 335 94.9
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 3.2e-179 631.7 338 93.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 5.1e-177 624.4 338 91.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.7e-177 624.0 334 92.5
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 5.7e-176 620.9 334 91.6
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 90.5
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.6e-175 619.4 338 90.2
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 90.2
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 89.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 89.6
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 89.9
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.3e-175 617.5 338 89.9
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 89.9
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.1e-174 616.7 333 91.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 90.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 89.9
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 2.4e-174 615.5 336 90.5
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.1e-174 615.1 333 91.3
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 5.3e-174 614.4 337 90.5
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 9.0e-174 613.6 338 89.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-173 613.2 339 88.8
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 89.3
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.5e-173 612.8 339 90.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-173 612.1 339 88.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.9
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 4.5e-173 611.3 338 89.1
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.9e-173 610.9 339 88.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.9e-173 610.9 335 90.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.9e-173 610.9 338 89.3
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 89.4
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 89.1
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.7e-172 609.4 337 89.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 3.8e-172 608.2 338 88.8
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.8e-172 608.2 339 89.1
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.4
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 6.5e-172 607.4 338 88.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 6.5e-172 607.4 339 89.1
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 8.4e-172 607.1 338 88.5
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.4e-171 606.3 332 90.4
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.4e-171 606.3 339 88.8
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.4e-171 606.3 339 88.8
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.9e-171 605.9 338 88.5
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 87.6
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 4.2e-171 604.7 339 87.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 4.2e-171 604.7 332 89.5
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 7.2e-171 604.0 338 87.6
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 88.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 87.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 87.6
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 2.1e-170 602.4 339 87.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 6.1e-170 600.9 339 87.6
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 7.9e-170 600.5 338 87.3
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.3e-169 599.7 339 87.6
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-169 599.7 339 87.6
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.0e-169 598.6 341 87.7
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 339 87.3
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 1.9e-168 595.9 332 88.3
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 3.3e-168 595.1 332 87.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.7e-168 593.6 340 86.5
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.2e-167 592.4 333 87.7
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 339 86.1
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.8e-167 591.3 340 86.5
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.1e-166 590.1 332 86.7
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 4.1e-166 588.2 380 78.7
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 5.3e-166 587.8 334 87.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.6e-165 585.5 325 89.8
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.4e-165 585.1 338 83.1
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.0e-164 583.6 335 84.5
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 5.0e-164 581.3 354 82.2
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.9e-163 579.3 332 86.4
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 7.2e-163 577.4 335 83.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 319 89.0
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 3.6e-162 575.1 317 89.3
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 4.6e-162 574.7 336 83.3
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.3
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 83.3
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-161 573.5 336 82.7
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.0e-161 573.5 335 83.3
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.4e-161 573.2 336 83.0
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-161 572.8 337 82.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.8e-161 572.8 309 90.6
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.8e-161 572.8 316 89.2
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.3e-161 572.4 336 83.3
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 2.3e-161 572.4 335 83.0
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.3e-161 572.4 335 83.3
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 3.9e-161 571.6 336 82.7
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 83.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 5.1e-161 571.2 335 82.7
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 338 82.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 5.1e-161 571.2 335 83.0
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 6.7e-161 570.9 335 83.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.8e-161 570.5 320 88.1
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-160 569.7 338 84.9
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.7
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 4.3e-160 568.2 336 82.4
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.7e-160 567.8 338 81.1
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 2.8e-159 565.5 337 81.6
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.8e-159 565.5 336 82.4
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 6.3e-159 564.3 327 82.9
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 8.2e-159 563.9 351 79.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 8.2e-159 563.9 309 89.0
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.1e-158 563.5 319 86.2
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 4.1e-158 561.6 343 80.8
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-157 560.1 339 83.8
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.9e-156 555.4 338 83.1
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 2.0e-152 542.7 336 76.2
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 9.7e-152 540.4 316 83.2
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.3e-151 540.0 332 75.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 2.8e-151 538.9 378 74.6
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.6e-149 532.3 337 76.6
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.7e-148 529.6 295 90.2
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.2e-148 529.3 334 75.7
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.9e-148 528.9 334 75.4
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 9.4e-147 523.9 420 66.9
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 3.1e-142 508.8 363 71.9
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.6e-138 496.5 271 90.0
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.7e-138 495.0 338 76.9
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-136 490.0 264 92.8
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-136 490.0 264 92.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.0e-136 489.6 264 92.0
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 8.3e-135 484.2 323 72.1
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.8e-132 475.3 338 74.0
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.1e-131 473.8 338 73.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.6e-124 447.6 344 66.6
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 2.9e-119 432.6 251 83.3
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 2.4e-118 429.5 238 87.8
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 9.5e-115 417.5 315 62.2
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.7e-111 405.6 251 80.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 6.6e-108 394.8 216 89.8
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 3.3e-107 392.5 241 77.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 4.1e-102 375.6 330 57.6
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 3.9e-100 369.0 317 54.9
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.1e-54 218.0 128 84.4
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.0e-44 183.3 168 58.3
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.2e-34 150.6 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 9.4e-30 135.2 79 82.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.2e-27 128.3 80 76.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 73 80.8
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 5.3e-25 119.4 74 75.7
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.8e-20 102.4 109 55.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.1e-14 85.1 51 78.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.8e-13 80.5 61 72.1
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 4.7e-13 79.7 42 85.7
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.2e-12 76.3 57 71.9
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.3e-10 71.6 118 38.1
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.6e-08 64.7 60 61.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.6e-08 64.7 60 61.7
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.9e-06 57.8 125 35.2
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 3.3e-06 57.0 86 44.2


User provided reference genes

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