Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 5.9e-90 334.7 245 100.0
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 5.9e-90 334.7 245 100.0
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 4.4e-45 185.7 188 59.6
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 1.7e-41 173.7 169 59.8
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.1e-40 171.0 169 58.0
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 3.3e-40 169.5 188 54.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 2.6e-37 159.8 181 53.6
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 4.4e-37 159.1 187 51.3
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.7e-36 157.1 170 58.2
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 2.9e-36 156.4 183 52.5
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 6.4e-36 155.2 184 53.3
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 4.1e-35 152.5 187 50.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.8e-30 137.1 221 43.4
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 9.2e-27 124.8 205 42.9
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 4.6e-26 122.5 205 41.5
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.3e-25 120.9 199 45.2
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 6.6e-25 118.6 171 44.4
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.1e-24 117.9 216 39.8
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 4.3e-24 115.9 178 47.2
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 9.5e-24 114.8 203 41.4
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.2e-23 114.4 205 43.4
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 2.1e-23 113.6 195 45.1
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 4.7e-23 112.5 177 44.1
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.1e-23 111.7 193 43.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.0e-22 109.4 204 39.2
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 4.0e-22 109.4 205 39.0
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 6.8e-22 108.6 179 43.6
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.9e-22 108.2 182 41.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.2e-21 107.8 178 39.9
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.2e-21 107.8 189 39.7
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 9.9e-21 104.8 187 38.5
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.7e-20 104.0 196 37.2
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 2.2e-20 103.6 195 43.6
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 2.9e-20 103.2 202 39.1
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 4.9e-20 102.4 197 41.6
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 6.4e-20 102.1 191 39.3
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 8.4e-20 101.7 202 36.1
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.9e-19 100.5 197 38.1
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.1e-19 99.4 195 39.0
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.2e-18 97.8 183 39.9
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.2e-18 97.8 196 38.8
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-18 97.4 168 44.0
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-18 97.4 196 37.8
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.6e-18 95.9 168 44.0
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 4.6e-18 95.9 223 35.9
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 7.8e-18 95.1 176 45.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 7.8e-18 95.1 202 37.6
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 7.8e-18 95.1 168 42.9
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 7.8e-18 95.1 196 36.2
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 7.8e-18 95.1 212 37.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.7e-17 94.0 169 41.4
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.7e-17 94.0 209 34.9
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 3.0e-17 93.2 169 40.2
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 3.0e-17 93.2 201 38.8
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 5.1e-17 92.4 210 39.0
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 6.6e-17 92.0 202 35.1
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.1e-16 91.3 168 43.5
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.1e-16 91.3 219 36.1
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.5e-16 90.9 220 34.5
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.9e-16 90.5 194 41.2
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-16 90.5 168 42.9
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.9e-16 90.5 193 36.8
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 3.3e-16 89.7 212 35.8
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.3e-16 89.4 211 37.9
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 4.3e-16 89.4 193 36.3
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 7.3e-16 88.6 225 34.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 6.2e-15 85.5 220 34.5
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.4e-14 84.3 198 33.3
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.8e-14 84.0 203 36.0
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.8e-14 84.0 206 36.4
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 4.0e-14 82.8 198 34.3
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.0e-14 82.8 195 33.3
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 5.2e-14 82.4 189 35.4
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 6.9e-14 82.0 201 35.8
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 6.9e-14 82.0 103 49.5
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.5e-13 80.9 198 37.4
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.0e-13 80.5 195 41.5
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 2.0e-13 80.5 191 35.6
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 2.0e-13 80.5 191 35.6
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.0e-13 80.5 210 35.7
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 2.0e-13 80.5 223 32.7
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.4e-13 79.7 223 32.3
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 7.6e-13 78.6 195 33.3
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 7.6e-13 78.6 198 35.4
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.3e-12 77.8 66 60.6
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.3e-12 77.8 206 34.5
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.2e-12 77.0 170 35.3
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.2e-12 77.0 193 36.3
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 2.9e-12 76.6 168 36.9
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 2.9e-12 76.6 189 33.9
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.9e-12 75.9 209 32.1
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 6.4e-12 75.5 199 35.2
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.1e-11 74.7 170 36.5
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.4e-11 74.3 204 35.3
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.9e-11 73.9 170 35.9
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.4e-11 73.6 213 30.0
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 3.2e-11 73.2 133 36.8
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 4.2e-11 72.8 186 35.5
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 5.4e-11 72.4 190 34.2
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 7.1e-11 72.0 170 35.3
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 7.1e-11 72.0 189 33.3
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.6e-10 70.9 189 33.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 2.1e-10 70.5 204 34.8
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 3.5e-10 69.7 185 35.7
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 4.6e-10 69.3 184 32.6
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 6.0e-10 68.9 201 31.3
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 1.7e-09 67.4 176 33.0
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 3.0e-09 66.6 172 33.7
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 5.1e-09 65.9 168 35.1
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 8.7e-09 65.1 194 31.4
Sp6g24210 Schrenkiella parvula HOM05D001903 ORTHO05D001847 1.9e-08 63.9 199 30.7
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 3.3e-08 63.2 67 53.7
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 9.6e-08 61.6 172 33.7
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 9.6e-08 61.6 42 64.3
SEGI_05294 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.3e-07 61.2 105 35.2
Gohir.A13G199800 Gossypium hirsutum HOM05D001903 ORTHO05D001847 1.6e-07 60.8 198 28.8
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 1.6e-07 60.8 197 32.5
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 2.1e-07 60.5 221 29.0
A10p19730 Brassica napus HOM05D001903 ORTHO05D001847 2.8e-07 60.1 193 30.1
THA.LOC104799641 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 2.8e-07 60.1 206 32.0
Gorai.013G234200 Gossypium raimondii HOM05D001903 ORTHO05D001847 3.6e-07 59.7 193 29.0
CARHR192630 Cardamine hirsuta HOM05D001903 ORTHO05D001847 1.1e-06 58.2 199 28.1
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.4e-06 57.8 64 48.4
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.4e-06 57.8 210 29.5
Nn2g12060 Nelumbo nucifera HOM05D001903 ORTHO05D001847 1.8e-06 57.4 119 34.5
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.8e-06 57.4 31 83.9
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.1e-06 56.6 64 50.0
SGA_v2.0_scaffold37G14772 Striga asiatica HOM05D001903 ORTHO05D001847 3.1e-06 56.6 196 30.6
SGA_v2.0_scaffold5G02688 Striga asiatica HOM05D001903 ORTHO05D001847 3.1e-06 56.6 153 32.7
TPR.G37230 Trifolium pratense HOM05D001903 ORTHO05D001847 3.1e-06 56.6 111 36.0
Gohir.A06G055100 Gossypium hirsutum HOM05D001903 ORTHO05D001847 4.0e-06 56.2 185 30.3
Mapoly0003s0253 Marchantia polymorpha HOM05D036240 ORTHO05D031199 4.0e-06 56.2 61 52.5
BcaB08g36543 Brassica carinata HOM05D001903 ORTHO05D001847 5.3e-06 55.8 199 27.6
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 5.3e-06 55.8 35 68.6
SEGI_05061 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 5.3e-06 55.8 154 31.8
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 6.9e-06 55.5 223 30.0
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 6.9e-06 55.5 31 80.6
THA.LOC104803660 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 6.9e-06 55.5 62 46.8
BcaB05g22864 Brassica carinata HOM05D001903 ORTHO05D001847 9.0e-06 55.1 202 27.7
BraA10t44049Z Brassica rapa HOM05D001903 ORTHO05D001847 9.0e-06 55.1 192 29.2
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 9.0e-06 55.1 64 45.3
Glyma.15G007900 Glycine max HOM05D001903 ORTHO05D001847 9.0e-06 55.1 64 53.1
SEGI_04018 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 9.0e-06 55.1 34 70.6
TWI63G1536 Tripterygium wilfordii HOM05D001903 ORTHO05D001847 9.0e-06 55.1 189 30.2


User provided reference genes

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