Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 1.3e-51 207.2 109 100.0
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 2.4e-50 203.0 108 99.1
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 1.1e-23 114.4 65 90.8
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 4.2e-23 112.5 65 89.2
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 5.5e-23 112.1 62 95.2
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 5.5e-23 112.1 65 90.8
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 7.2e-23 111.7 65 89.2
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 9.4e-23 111.3 65 87.7
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 1.2e-22 110.9 65 89.2
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 2.1e-22 110.2 62 93.5
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 2.1e-22 110.2 65 89.2
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 4.7e-22 109.0 62 91.9
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 6.1e-22 108.6 62 91.9
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 6.1e-22 108.6 62 93.5
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 7.9e-22 108.2 62 91.9
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.0e-21 107.8 62 90.3
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.0e-21 107.8 62 90.3
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 1.8e-21 107.1 62 90.3
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 1.8e-21 107.1 62 90.3
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 1.8e-21 107.1 62 90.3
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 1.8e-21 107.1 64 85.9
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 2.3e-21 106.7 61 91.8
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 2.3e-21 106.7 62 88.7
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 3.9e-21 105.9 65 84.6
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 3.9e-21 105.9 65 84.6
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 5.2e-21 105.5 62 88.7
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 6.7e-21 105.1 64 85.9
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 6.7e-21 105.1 64 85.9
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 8.8e-21 104.8 61 90.2
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 1.5e-20 104.0 65 81.5
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.5e-20 104.0 67 76.1
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 1.5e-20 104.0 61 90.2
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 2.0e-20 103.6 59 93.2
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 2.0e-20 103.6 62 87.1
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 2.0e-20 103.6 61 88.5
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 2.0e-20 103.6 61 88.5
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.6e-20 103.2 62 87.1
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 2.6e-20 103.2 62 85.5
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 2.6e-20 103.2 65 78.5
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 3.3e-20 102.8 64 84.4
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 4.4e-20 102.4 61 86.9
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 4.4e-20 102.4 62 85.5
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 5.7e-20 102.1 65 83.1
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 5.7e-20 102.1 64 81.2
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 5.7e-20 102.1 62 87.1
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 5.7e-20 102.1 65 81.5
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 5.7e-20 102.1 62 85.5
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 5.7e-20 102.1 61 86.9
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 9.7e-20 101.3 59 89.8
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 1.7e-19 100.5 59 88.1
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 1.7e-19 100.5 59 88.1
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 1.7e-19 100.5 59 88.1
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 1.7e-19 100.5 59 88.1
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 1.7e-19 100.5 59 89.8
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 1.7e-19 100.5 65 80.0
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 2.2e-19 100.1 59 88.1
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 2.2e-19 100.1 64 81.2
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 2.8e-19 99.8 59 88.1
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 2.8e-19 99.8 61 85.2
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 3.7e-19 99.4 59 86.4
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 3.7e-19 99.4 69 79.7
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 3.7e-19 99.4 71 78.9
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 4.8e-19 99.0 59 88.1
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 1.1e-18 97.8 62 82.3
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 1.4e-18 97.4 62 80.6
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.4e-18 97.4 58 86.2
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.4e-18 97.4 65 78.5
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.4e-18 97.4 63 77.8
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 1.4e-18 97.4 63 79.4
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 2.4e-18 96.7 63 76.2
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 3.1e-18 96.3 62 79.0
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 3.1e-18 96.3 68 73.5
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 3.1e-18 96.3 66 74.2
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 5.3e-18 95.5 65 73.8
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 7.0e-18 95.1 64 76.6
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 7.0e-18 95.1 63 74.6
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 7.0e-18 95.1 61 80.3
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 1.2e-17 94.4 61 80.3
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 3.5e-17 92.8 59 78.0
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 1.7e-16 90.5 58 79.3
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.7e-16 90.5 63 74.6
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 5.0e-16 89.0 59 81.4
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 8.5e-16 88.2 63 71.4
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 1.9e-15 87.0 64 70.3
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 7.2e-15 85.1 79 63.3
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 2.1e-14 83.6 54 79.6
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 1.0e-13 81.3 51 80.4
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 1.0e-13 81.3 52 80.8
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 2.3e-13 80.1 51 78.4
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 8.8e-13 78.2 50 76.0
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 1.5e-12 77.4 53 81.1
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 5.7e-12 75.5 55 70.9
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 2.7e-09 66.6 54 68.5
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 1.7e-08 63.9 35 88.6
FvH4_2g14440 Fragaria vesca HOM05D007682 ORTHO05D009690 1.5e-07 60.8 35 82.9
COL.COLO4_10551 Corchorus olitorius HOM05D007682 ORTHO05D009690 3.6e-06 56.2 33 87.9
Pp3c11_23030 Physcomitrium patens HOM05D007682 ORTHO05D009690 8.0e-06 55.1 54 57.4


User provided reference genes

Program Settings