Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 6.3e-149 531.2 363 100.0
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.4e-140 503.4 363 96.1
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 3.6e-112 409.1 367 77.7
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 4.7e-104 382.1 366 75.4
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 8.4e-101 371.3 367 71.4
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 5.4e-100 368.6 366 72.7
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 1.8e-95 353.6 360 70.8
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 3.2e-92 342.8 355 73.2
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 4.6e-91 339.0 369 70.7
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 9.9e-86 321.2 315 75.2
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 2.1e-75 287.0 365 61.6
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 6.0e-75 285.4 365 67.7
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 1.0e-74 284.6 370 60.5
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 1.9e-73 280.4 367 62.1
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 2.5e-73 280.0 360 63.6
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 3.3e-73 279.6 364 61.5
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 9.7e-73 278.1 367 62.1
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 9.7e-73 278.1 381 60.6
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 1.3e-72 277.7 372 61.3
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 1.3e-72 277.7 243 62.1
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 2.2e-72 276.9 391 60.1
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 4.8e-72 275.8 365 66.3
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 6.3e-72 275.4 382 58.9
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 2.4e-71 273.5 364 62.6
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 4.1e-71 272.7 401 48.9
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 9.0e-71 271.6 391 58.6
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 9.0e-71 271.6 379 60.9
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 3.4e-70 269.6 375 64.0
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 1.7e-69 267.3 375 63.2
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 8.5e-69 265.0 370 58.1
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 1.9e-68 263.8 367 61.3
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.5e-68 263.5 370 58.1
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 2.5e-68 263.5 364 64.0
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 5.5e-68 262.3 382 59.4
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 7.2e-68 261.9 370 57.8
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 7.2e-68 261.9 373 58.7
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 9.4e-68 261.5 370 57.8
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 1.6e-67 260.8 365 58.1
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.6e-67 260.8 386 54.7
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 3.6e-67 259.6 368 58.4
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 4.6e-67 259.2 369 58.8
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 7.9e-67 258.5 371 57.1
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.4e-66 257.7 382 56.3
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 1.8e-66 257.3 364 58.2
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 3.0e-66 256.5 390 56.9
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 6.7e-66 255.4 384 56.0
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 1.1e-65 254.6 364 58.0
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 3.3e-65 253.1 362 63.8
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 5.7e-65 252.3 373 57.4
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 9.7e-65 251.5 370 57.6
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 3.7e-64 249.6 364 59.3
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 1.1e-63 248.1 371 58.2
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 1.8e-63 247.3 361 60.1
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 4.1e-63 246.1 367 59.4
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 6.9e-63 245.4 384 52.9
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 6.9e-63 245.4 370 58.6
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 2.0e-62 243.8 396 54.5
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 3.4e-62 243.0 373 56.8
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 4.5e-62 242.7 361 56.8
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 1.7e-61 240.7 385 52.7
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 2.2e-61 240.4 371 57.7
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 2.9e-61 240.0 359 58.5
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 3.8e-61 239.6 371 52.8
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 5.0e-61 239.2 365 52.6
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 1.1e-60 238.0 362 59.1
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.1e-60 238.0 371 57.7
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 1.4e-60 237.7 362 57.5
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 9.4e-60 235.0 361 57.9
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 9.4e-60 235.0 384 54.2
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 1.6e-59 234.2 361 58.2
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 3.6e-59 233.0 361 56.2
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 6.1e-59 232.3 361 57.6
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 6.1e-59 232.3 361 57.6
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 5.7e-57 225.7 363 55.1
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 7.4e-57 225.3 373 57.1
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 2.8e-56 223.4 371 53.1
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 2.8e-56 223.4 310 62.6
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 3.1e-55 219.9 394 51.3
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 4.1e-55 219.5 352 56.0
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 9.1e-55 218.4 366 52.5
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.9e-52 210.7 355 52.4
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 5.5e-52 209.1 238 48.7
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 2.7e-51 206.8 363 53.4
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 1.4e-50 204.5 369 53.1
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 3.9e-50 203.0 280 65.4
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 5.2e-50 202.6 330 59.1
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 2.4e-47 193.7 248 46.0
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 1.7e-45 187.6 363 56.7
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.5e-44 184.5 240 44.2
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 4.2e-44 183.0 117 76.9
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 5.5e-44 182.6 392 48.2
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 1.2e-43 181.4 181 51.9
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 1.6e-43 181.0 195 49.7
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 4.7e-43 179.5 366 50.8
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 3.0e-42 176.8 367 52.0
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 5.2e-42 176.0 396 41.7
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.2e-41 174.9 204 44.1
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 1.2e-41 174.9 365 51.5
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.6e-41 173.7 257 42.0
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 8.5e-37 158.7 251 60.6
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.8e-34 151.0 362 43.9
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 3.7e-32 143.3 363 42.4
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 1.1e-31 141.7 260 65.4
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 2.8e-27 127.1 164 46.3
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 4.7e-27 126.3 170 41.2
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 4.0e-26 123.2 110 55.5
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 1.3e-24 118.2 205 35.1
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 8.3e-24 115.5 365 43.8
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 5.0e-21 106.3 66 75.8
PSO782G5619 Papaver somniferum HOM05D006395 ORTHO05D007894 5.0e-21 106.3 66 78.8
Os10g0456200 Oryza sativa ssp. japonica HOM05D006395 ORTHO05D007894 6.6e-21 105.9 139 44.6
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 3.4e-17 93.6 64 71.9
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 4.4e-17 93.2 192 59.4
PSO339G4463 Papaver somniferum HOM05D006395 ORTHO05D007894 5.8e-17 92.8 56 80.4
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.1e-15 88.6 66 63.6
MD11G1065800 Malus domestica HOM05D006395 ORTHO05D007894 1.3e-13 81.6 114 41.2
PSO675G0236 Papaver somniferum HOM05D006395 ORTHO05D007894 3.0e-13 80.5 97 51.5
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 3.9e-13 80.1 262 24.0
Migut.D00856 Erythranthe guttata HOM05D006395 ORTHO05D007894 5.6e-12 76.3 75 48.0
Nitab4.5_0000967g0090 Nicotiana tabacum HOM05D000734 ORTHO05D002223 1.1e-10 72.0 77 51.9
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-10 68.9 91 36.3
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 1.5e-09 68.2 65 52.3
SEGI_33382 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 2.2e-08 64.3 66 47.0
PRCOL_00004668 Prasinoderma coloniale HOM05D006395 ORTHO05D007894 2.9e-08 63.9 375 35.2
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.1e-07 62.0 250 52.0
FAN06G1459 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.9e-07 61.2 37 75.7
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 1.9e-07 61.2 58 43.1
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 4.1e-07 60.1 61 44.3
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 4.1e-07 60.1 58 43.1
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 5.4e-07 59.7 62 43.5
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 5.4e-07 59.7 250 51.6
FAN07G0114 Fragaria x ananassa HOM05D005731 ORTHO05D012104 7.0e-07 59.3 35 74.3
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 9.2e-07 58.9 61 42.6
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.2e-06 58.5 61 41.0
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.2e-06 58.5 249 51.8
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 1.6e-06 58.2 67 38.8
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 1.6e-06 58.2 64 43.8
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.6e-06 58.2 113 34.5
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.6e-06 58.2 73 37.0
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 2.1e-06 57.8 64 37.5
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 2.1e-06 57.8 65 44.6
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 2.7e-06 57.4 61 39.3
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 3.5e-06 57.0 249 52.2
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 3.5e-06 57.0 64 39.1
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 3.5e-06 57.0 61 41.0
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 3.5e-06 57.0 61 41.0
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 3.5e-06 57.0 62 46.8
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 3.5e-06 57.0 64 40.6
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 4.6e-06 56.6 61 39.3
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 4.6e-06 56.6 64 39.1
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 4.6e-06 56.6 77 33.8
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 4.6e-06 56.6 77 33.8
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 4.6e-06 56.6 77 33.8
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 4.6e-06 56.6 64 39.1
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 4.6e-06 56.6 73 35.6
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 4.6e-06 56.6 66 37.9
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.6e-06 56.6 73 35.6
MCO14G433 Micromonas commoda HOM05D006395 ORTHO05D007894 4.6e-06 56.6 81 39.5
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 6.0e-06 56.2 61 39.3
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 6.0e-06 56.2 72 37.5
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 7.8e-06 55.8 76 35.5
Cre16.g684800 Chlamydomonas reinhardtii HOM05D006395 ORTHO05D007894 7.8e-06 55.8 283 43.8
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 7.8e-06 55.8 61 44.3
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 7.8e-06 55.8 60 48.3


User provided reference genes

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