Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 2.3e-37 158.3 75 100.0
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 7.2e-31 136.7 64 98.4
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 7.2e-31 136.7 64 98.4
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.1e-30 133.7 64 96.9
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 6.1e-30 133.7 68 88.2
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 1.0e-29 132.9 68 91.2
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.0e-29 132.9 64 95.3
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 1.4e-29 132.5 68 86.8
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.3e-29 131.7 64 95.3
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 6.7e-29 130.2 68 85.3
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 1.1e-28 129.4 64 93.8
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 3.3e-28 127.9 68 85.3
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 4.4e-28 127.5 68 85.3
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 5.7e-28 127.1 68 85.3
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 7.4e-28 126.7 68 82.4
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-27 125.6 64 90.6
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.7e-27 125.6 68 82.4
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 1.7e-27 125.6 70 81.4
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 2.8e-27 124.8 68 82.4
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 2.8e-27 124.8 68 83.8
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 4.8e-27 124.0 68 80.9
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 6.3e-27 123.6 68 79.4
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 6.3e-27 123.6 68 82.4
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 2.4e-26 121.7 68 79.4
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 4.1e-26 120.9 68 79.4
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 5.3e-26 120.6 64 82.8
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 7.0e-26 120.2 68 76.5
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 7.0e-26 120.2 68 77.9
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 7.0e-26 120.2 68 77.9
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 9.1e-26 119.8 66 81.8
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.5e-25 119.0 64 89.1
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 1.5e-25 119.0 68 76.5
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.6e-25 118.2 64 81.2
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 3.5e-25 117.9 68 75.0
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 3.5e-25 117.9 68 73.5
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 4.5e-25 117.5 68 75.0
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 5.9e-25 117.1 68 73.5
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.9e-25 117.1 68 77.9
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.9e-25 117.1 68 77.9
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 5.9e-25 117.1 64 81.2
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 7.7e-25 116.7 68 73.5
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 7.7e-25 116.7 64 84.4
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 1.0e-24 116.3 65 78.5
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.0e-24 116.3 64 81.2
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 1.3e-24 115.9 71 70.4
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 1.3e-24 115.9 64 79.7
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.7e-24 115.5 68 73.5
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 2.2e-24 115.2 68 72.1
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 2.2e-24 115.2 68 75.0
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.2e-24 115.2 64 78.1
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 2.9e-24 114.8 69 71.0
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 2.9e-24 114.8 68 73.5
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 2.9e-24 114.8 68 76.5
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 2.9e-24 114.8 68 75.0
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 2.9e-24 114.8 68 75.0
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 3.8e-24 114.4 68 72.1
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 3.8e-24 114.4 64 81.2
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 3.8e-24 114.4 66 77.3
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 5.0e-24 114.0 68 72.1
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 5.0e-24 114.0 68 73.5
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 6.5e-24 113.6 68 72.1
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 6.5e-24 113.6 68 73.5
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 8.5e-24 113.2 68 70.6
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 8.5e-24 113.2 68 70.6
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 1.1e-23 112.8 68 70.6
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.1e-23 112.8 64 79.7
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.1e-23 112.8 68 70.6
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 1.1e-23 112.8 68 73.5
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 1.1e-23 112.8 68 70.6
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 1.1e-23 112.8 68 72.1
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 1.4e-23 112.5 68 69.1
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.4e-23 112.5 68 69.1
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 1.4e-23 112.5 68 69.1
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 1.4e-23 112.5 68 69.1
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.4e-23 112.5 68 72.1
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 1.9e-23 112.1 68 70.6
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 1.9e-23 112.1 68 70.6
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 1.9e-23 112.1 68 73.5
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 1.9e-23 112.1 68 69.1
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 1.9e-23 112.1 68 72.1
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 2.5e-23 111.7 66 77.3
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 2.5e-23 111.7 68 70.6
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 3.2e-23 111.3 68 72.1
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 3.2e-23 111.3 68 72.1
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 3.2e-23 111.3 68 73.5
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 3.2e-23 111.3 68 73.5
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 4.2e-23 110.9 68 67.6
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 4.2e-23 110.9 68 70.6
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 4.2e-23 110.9 68 70.6
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 4.2e-23 110.9 68 70.6
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 7.2e-23 110.2 64 71.9
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 7.2e-23 110.2 64 71.9
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 7.2e-23 110.2 68 72.1
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 7.2e-23 110.2 68 72.1
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 7.2e-23 110.2 64 76.6
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 7.2e-23 110.2 68 69.1
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 9.4e-23 109.8 68 70.6
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 1.2e-22 109.4 64 76.6
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 1.2e-22 109.4 65 73.8
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 1.6e-22 109.0 65 70.8
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 2.1e-22 108.6 64 71.9
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.7e-22 108.2 68 67.6
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 2.7e-22 108.2 68 67.6
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 4.7e-22 107.5 68 66.2
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 8.0e-22 106.7 64 73.4
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 8.0e-22 106.7 68 69.1
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 1.0e-21 106.3 68 64.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.0e-21 106.3 64 75.0
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.8e-21 105.5 68 67.6
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 2.3e-21 105.1 68 67.6
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.5e-20 102.4 78 64.1
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 1.5e-20 102.4 65 64.6
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.0e-20 102.1 68 64.7
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 2.6e-20 101.7 64 68.8
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 2.6e-20 101.7 68 61.8
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 7.4e-20 100.1 68 61.8
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.7e-19 99.0 68 63.2
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 2.8e-19 98.2 68 60.3
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 4.8e-19 97.4 64 67.2
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 6.3e-19 97.1 68 63.2
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 8.2e-19 96.7 64 67.2
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 8.2e-19 96.7 60 71.7
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 1.1e-18 96.3 104 47.1
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.4e-18 95.9 68 61.8
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 1.8e-18 95.5 64 62.5
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 2.4e-18 95.1 68 61.8
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 2.4e-18 95.1 51 80.4
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 4.1e-18 94.4 68 60.3
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 4.1e-18 94.4 68 61.8
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 4.1e-18 94.4 68 61.8
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 4.1e-18 94.4 68 61.8
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 7.0e-18 93.6 64 60.9
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 9.1e-18 93.2 68 60.3
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.6e-17 91.7 68 58.8
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 7.7e-17 90.1 64 57.8
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 7.7e-17 90.1 68 58.8
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 2.7e-14 81.6 61 57.4
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 5.2e-13 77.4 36 94.4
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.2e-12 76.3 36 91.7
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 1.2e-12 76.3 64 53.1
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 1.5e-12 75.9 71 47.9
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 2.0e-12 75.5 68 54.4
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 4.4e-12 74.3 42 73.8
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 1.8e-10 68.9 65 47.7
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 2.0e-09 65.5 40 72.5
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 3.6e-06 54.7 49 49.0


User provided reference genes

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