Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 3.7e-291 1004.2 521 100.0
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 3.7e-235 818.1 432 98.6
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.3e-235 817.0 432 98.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 2.2e-211 739.2 432 89.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.0e-209 731.1 467 84.8
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 3.9e-208 728.4 432 86.8
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.6e-206 721.8 441 85.5
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 2.0e-204 716.1 427 86.4
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 9.9e-204 713.8 432 85.9
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 4.9e-203 711.4 432 85.6
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 3.2e-202 708.8 432 85.2
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 6.0e-201 704.5 432 85.0
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 9.0e-197 690.6 425 84.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 1.0e-192 677.2 425 82.8
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.1e-189 667.2 513 71.3
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 5.8e-188 661.4 433 80.1
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.2e-187 659.4 439 79.5
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 6.4e-187 657.9 432 80.6
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.9e-184 648.7 432 79.6
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.1e-182 642.9 436 77.8
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 6.2e-182 641.3 436 79.1
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.0e-181 638.6 437 77.1
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 5.3e-181 638.3 432 78.9
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 3.4e-180 635.6 434 77.6
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 9.9e-180 634.0 436 77.1
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.3e-179 633.6 440 77.3
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.8e-179 632.1 432 77.5
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 2.5e-178 629.4 432 78.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 7.1e-178 627.9 435 77.7
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 7.1e-178 627.9 434 76.3
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.9e-177 624.4 432 77.5
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.0e-176 624.0 438 76.0
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.3e-176 623.6 431 77.3
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.9e-175 619.8 433 75.5
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.9e-175 619.8 434 76.5
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.7e-174 615.5 434 75.3
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.4e-173 613.6 436 76.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.4e-173 612.8 428 75.2
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.5e-172 610.1 426 76.3
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.0e-172 609.8 418 76.6
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 2.6e-172 609.4 439 72.9
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 3.4e-172 609.0 429 73.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 4.5e-172 608.6 474 70.3
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 7.6e-172 607.8 436 73.4
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.0e-171 607.4 425 76.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.3e-171 607.1 438 74.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 2.2e-171 606.3 437 74.1
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.9e-171 605.9 425 76.7
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.9e-171 605.9 425 76.7
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.9e-171 605.9 425 76.7
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.9e-171 605.9 425 76.7
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.9e-171 605.9 425 76.7
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.5e-171 604.7 436 73.6
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-170 604.0 436 73.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.4e-170 603.6 428 76.2
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 2.5e-170 602.8 422 75.4
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 4.2e-170 602.1 425 75.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 5.5e-170 601.7 425 75.1
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 7.1e-170 601.3 425 75.1
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 9.3e-170 600.9 430 74.4
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.2e-169 600.5 421 75.5
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.1e-169 599.7 437 74.4
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 7.9e-169 597.8 432 75.2
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 2.3e-168 596.3 450 71.1
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.3e-168 596.3 436 73.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 3.9e-168 595.5 425 75.5
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.9e-167 593.2 418 74.6
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 4.3e-167 592.0 425 74.1
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 4.3e-167 592.0 479 68.5
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.3e-166 590.5 450 71.3
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 4.8e-166 588.6 425 76.2
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.8e-165 586.6 432 73.8
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.9e-165 584.7 430 74.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 9.0e-165 584.3 437 73.0
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 3.4e-164 582.4 445 72.1
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 3.4e-164 582.4 440 72.0
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 7.7e-164 581.3 432 71.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.7e-163 580.1 428 73.4
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 2.2e-163 579.7 432 71.8
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.9e-163 579.3 432 72.5
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.5e-162 576.2 432 69.9
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.2e-161 573.9 434 73.3
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 1.6e-161 573.5 424 74.8
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 6.1e-161 571.6 406 74.1
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.0e-160 570.9 430 70.5
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 2.3e-160 569.7 430 69.8
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.0e-160 569.3 436 70.2
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 1.1e-159 567.4 424 74.8
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 3.3e-159 565.8 437 69.8
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 7.4e-159 564.7 419 72.6
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 9.7e-159 564.3 385 76.1
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.8e-158 562.8 428 72.9
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 4.8e-158 562.0 426 70.4
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 3.4e-156 555.8 426 69.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 4.2e-154 548.9 439 70.8
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 9.4e-154 547.7 450 68.7
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 7.9e-153 544.7 426 70.2
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.9e-152 542.3 435 67.8
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.1e-151 540.8 470 65.1
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.5e-151 540.4 427 68.9
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.8e-150 535.4 428 65.9
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 7.0e-149 531.6 434 68.0
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.0e-147 527.7 340 81.5
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.2e-147 526.6 434 68.7
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 3.2e-146 522.7 494 63.4
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.5e-143 513.8 385 74.3
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.3e-143 512.7 435 66.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 5.7e-143 511.9 395 70.9
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 2.0e-140 503.4 523 57.4
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 3.5e-140 502.7 417 64.3
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 6.5e-139 498.4 429 63.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.4e-136 490.7 432 65.7
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 4.0e-136 489.2 424 63.0
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 5.7e-135 485.3 384 72.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.2e-131 473.4 380 70.8
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.5e-130 469.9 423 61.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.7e-126 456.1 409 60.4
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.6e-124 450.7 370 66.2
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.7e-123 447.2 415 60.2
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.3e-123 446.8 405 61.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 6.6e-123 445.3 443 55.3
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.5e-122 444.1 325 73.5
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 6.1e-121 438.7 397 64.0
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.2e-118 430.3 429 56.6
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.9e-114 417.2 409 56.0
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.0e-112 409.5 432 55.8
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-104 384.8 361 59.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.2e-87 328.2 217 79.3
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 9.0e-64 248.8 379 39.1
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.8e-56 224.6 424 35.8
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 3.8e-38 163.7 207 50.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.3e-30 138.7 84 82.1
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 8.5e-22 109.4 123 58.5
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 4.4e-18 97.1 55 83.6
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 7.5e-18 96.3 49 91.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 7.5e-18 96.3 49 91.8
arahy.Tifrunner.gnm1.ann1.B4BR5H Arachis hypogaea HOM05D036316 ORTHO05D082635 8.3e-09 66.2 43 76.7
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.9e-07 60.1 53 60.4


User provided reference genes

Program Settings