Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 3.1e-55 218.4 123 100.0
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 3.1e-55 218.4 123 100.0
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 1.3e-34 149.8 123 65.0
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 1.8e-34 149.4 123 65.0
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 5.1e-34 147.9 123 64.2
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.1e-31 140.2 123 63.4
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 1.8e-31 139.4 121 63.6
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 5.3e-31 137.9 121 62.8
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 1.2e-30 136.7 123 62.6
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 1.0e-29 133.7 123 65.0
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 6.5e-29 131.0 119 60.5
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 3.2e-28 128.6 121 57.9
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 9.3e-28 127.1 92 72.8
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 1.6e-27 126.3 123 57.7
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 2.7e-27 125.6 119 57.1
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 7.9e-27 124.0 124 54.8
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 1.0e-26 123.6 122 59.0
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 1.3e-26 123.2 90 68.9
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 1.8e-26 122.9 121 59.5
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 4.3e-25 118.2 122 54.1
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 7.4e-25 117.5 94 68.1
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 2.8e-24 115.5 120 52.5
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 8.2e-24 114.0 121 55.4
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 1.4e-23 113.2 91 61.5
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 2.4e-23 112.5 127 50.4
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 3.1e-23 112.1 120 55.8
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 6.9e-23 110.9 120 53.3
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.5e-22 109.8 125 54.4
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 1.5e-22 109.8 123 52.8
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 3.4e-22 108.6 86 65.1
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 3.4e-22 108.6 86 65.1
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 3.4e-22 108.6 124 54.8
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.0e-21 107.1 123 51.2
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.0e-21 107.1 123 51.2
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.3e-21 106.7 86 64.0
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 1.3e-21 106.7 90 60.0
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 8.5e-21 104.0 127 48.8
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 8.5e-21 104.0 123 50.4
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 1.9e-20 102.8 84 61.9
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 2.5e-20 102.4 85 62.4
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 2.5e-20 102.4 95 66.3
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 3.2e-20 102.1 91 58.2
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 4.2e-20 101.7 130 53.8
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 5.5e-20 101.3 128 53.1
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 9.3e-20 100.5 85 60.0
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.2e-19 100.1 90 58.9
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.2e-19 100.1 90 60.0
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.6e-19 99.8 90 60.0
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 2.1e-19 99.4 96 57.3
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 2.7e-19 99.0 90 58.9
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.0e-18 97.1 119 47.9
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 1.4e-18 96.7 93 59.1
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 3.0e-18 95.5 126 50.0
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 3.0e-18 95.5 132 46.2
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 5.1e-18 94.7 125 52.0
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 6.7e-18 94.4 123 46.3
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 6.7e-18 94.4 97 57.7
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 1.1e-17 93.6 93 55.9
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 2.5e-17 92.4 98 54.1
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 2.5e-17 92.4 99 53.5
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 2.5e-17 92.4 86 59.3
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 2.5e-17 92.4 95 58.9
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 4.3e-17 91.7 89 53.9
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 4.3e-17 91.7 93 57.0
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 4.3e-17 91.7 91 54.9
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 7.4e-17 90.9 96 56.2
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 2.2e-16 89.4 88 55.7
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 3.7e-16 88.6 91 58.2
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 4.8e-16 88.2 132 43.9
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 6.3e-16 87.8 125 46.4
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 8.2e-16 87.4 123 47.2
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.4e-15 86.7 94 56.4
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 3.1e-15 85.5 88 53.4
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 5.3e-15 84.7 99 54.5
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 6.9e-15 84.3 92 51.1
Glyma.17G015900 Glycine max HOM05D004695 ORTHO05D005372 1.2e-14 83.6 99 52.5
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 1.5e-14 83.2 92 51.1
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 2.0e-14 82.8 126 43.7
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 2.6e-14 82.4 125 42.4
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 3.4e-14 82.0 92 50.0
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 7.7e-14 80.9 93 51.6
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 1.0e-13 80.5 93 51.6
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 2.9e-13 79.0 86 53.5
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 2.9e-13 79.0 120 44.2
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 2.9e-13 79.0 86 50.0
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 8.5e-13 77.4 67 56.7
arahy.Tifrunner.gnm1.ann1.P7T279 Arachis hypogaea HOM05D004695 ORTHO05D005372 2.5e-12 75.9 125 41.6
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 3.2e-12 75.5 93 53.8
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 5.5e-12 74.7 97 48.5
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 5.5e-12 74.7 84 53.6
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 7.2e-12 74.3 83 51.8
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 7.2e-12 74.3 90 51.1
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 9.4e-12 73.9 103 46.6
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 9.4e-12 73.9 100 48.0
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 1.2e-11 73.6 77 55.8
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.2e-11 73.6 87 50.6
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 2.7e-11 72.4 86 46.5
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 3.6e-11 72.0 92 47.8
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 3.6e-11 72.0 94 46.8
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 3.6e-11 72.0 95 51.6
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 4.7e-11 71.6 99 47.5
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 6.1e-11 71.2 88 45.5
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 6.1e-11 71.2 100 45.0
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.0e-10 70.5 105 45.7
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 1.4e-10 70.1 95 43.2
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 1.4e-10 70.1 98 48.0
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 1.8e-10 69.7 95 43.2
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 1.8e-10 69.7 95 43.2
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 2.3e-10 69.3 86 48.8
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 3.0e-10 68.9 83 50.6
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 3.0e-10 68.9 84 47.6
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 3.0e-10 68.9 84 47.6
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 3.0e-10 68.9 106 45.3
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 3.9e-10 68.6 89 46.1
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 6.7e-10 67.8 103 44.7
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 6.7e-10 67.8 110 42.7
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 6.7e-10 67.8 87 48.3
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-09 67.0 90 50.0
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-09 67.0 89 48.3
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-09 67.0 90 50.0
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-09 67.0 89 48.3
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 1.1e-09 67.0 90 50.0
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 1.5e-09 66.6 88 46.6
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 1.5e-09 66.6 91 52.7
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 1.5e-09 66.6 72 51.4
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.5e-09 66.6 85 48.2
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 2.0e-09 66.2 84 44.0
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 2.0e-09 66.2 89 49.4
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 2.0e-09 66.2 84 44.0
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 2.0e-09 66.2 89 49.4
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 2.6e-09 65.9 90 43.3
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 2.6e-09 65.9 103 44.7
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 2.6e-09 65.9 90 43.3
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 2.6e-09 65.9 90 43.3
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 2.6e-09 65.9 62 53.2
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 3.3e-09 65.5 79 46.8
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 3.3e-09 65.5 96 44.8
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 4.4e-09 65.1 101 42.6
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 5.7e-09 64.7 81 51.9
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 5.7e-09 64.7 88 45.5
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 9.7e-09 63.9 89 46.1
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 9.7e-09 63.9 89 46.1
Cpa.g.sc147.16 Carica papaya HOM05D004695 ORTHO05D005372 2.2e-08 62.8 84 42.9
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 8.2e-08 60.8 86 44.2
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.1e-07 60.5 111 37.8
Sed0027149 Sechium edule HOM05D004695 ORTHO05D005372 1.4e-07 60.1 71 46.5
Zm00001eb287450 Zea mays HOM05D062724 ORTHO05D049710 2.4e-07 59.3 119 37.0
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 3.1e-07 58.9 86 44.2
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 3.1e-07 58.9 86 44.2
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 5.3e-07 58.2 96 40.6
HPP92_003158 Vanilla planifolia HOM05D004695 ORTHO05D005372 7.0e-07 57.8 94 37.2
CsaV3_6G015120 Cucumis sativus L. HOM05D039226 ORTHO05D005372 9.1e-07 57.4 88 44.3
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 1.2e-06 57.0 98 40.8
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 2.0e-06 56.2 84 38.1


User provided reference genes

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