Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 2022.3 1018 100.0
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1947.6 1036 95.5
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1887.1 1036 93.1
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1796.6 1005 91.6
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1561.6 1039 76.8
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1544.6 1038 76.2
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1544.3 1037 76.7
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1538.1 1038 75.8
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1532.3 1038 75.0
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1529.6 1038 75.4
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1520.8 1039 75.6
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1515.4 1038 75.0
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1509.6 1038 75.0
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1474.9 1039 73.6
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1468.4 1036 73.1
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1422.5 1038 70.8
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1387.5 1039 69.8
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1344.3 1065 67.9
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1342.8 1037 68.2
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1342.4 1025 66.5
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1321.6 1038 66.2
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1312.7 1015 66.0
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1306.2 1032 64.6
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1296.2 1032 63.7
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1285.8 1032 63.6
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1285.0 1033 63.3
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1260.4 1030 63.2
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1253.8 1031 62.7
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1252.7 1032 62.5
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1250.3 1036 62.4
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1246.9 1038 62.6
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 0.0e+00 1246.9 1042 65.0
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1239.6 1042 62.4
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1235.3 1031 62.7
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1234.9 1027 62.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1230.7 1032 62.4
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1228.8 1034 61.9
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1228.0 1027 62.2
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1226.8 1043 61.6
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1224.5 1031 61.1
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1224.5 817 74.5
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1221.8 1033 61.9
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1220.3 1034 61.3
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1218.8 1031 62.2
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1218.8 1039 61.2
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1218.0 1032 61.4
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1212.2 1031 61.8
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1206.0 992 63.3
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1204.5 938 64.0
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1201.0 1031 60.2
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1195.3 1031 61.0
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1195.3 1035 60.3
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1192.9 1031 60.0
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1192.9 1031 60.3
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1191.4 1034 60.0
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1189.9 1035 60.3
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1184.1 1031 60.0
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1183.7 1047 58.4
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1172.1 1040 58.8
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1169.8 1037 59.0
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1169.5 1049 58.4
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1167.5 1050 58.6
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1162.5 1049 58.3
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1151.0 1040 58.3
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1147.5 1043 57.9
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1141.3 1027 58.4
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1139.8 1028 59.9
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1131.7 1035 57.8
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1112.1 1033 57.2
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1111.7 1031 56.7
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1111.7 1025 57.9
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1106.3 1038 56.9
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1102.8 1033 57.6
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1099.3 1035 58.0
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1099.3 1028 55.3
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1098.2 1038 56.6
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1094.0 1035 56.5
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1094.0 1041 56.6
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1090.1 1013 58.0
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1088.9 1031 55.1
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1088.2 1031 55.3
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1083.2 1029 56.1
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1083.2 1026 57.1
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1082.4 1031 55.0
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1081.2 1033 56.1
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1080.9 1039 56.2
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1076.6 1039 56.1
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1075.8 1033 54.4
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1075.8 1036 56.5
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1075.1 1039 56.1
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1075.1 1035 56.4
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 7.0e-312 1073.9 1044 56.0
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 1.4e-311 1072.8 1034 55.9
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 2.8e-311 1072.0 1032 56.1
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 4.9e-311 1071.2 1109 53.7
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 1.4e-310 1069.7 1034 56.1
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 9.0e-310 1067.0 1034 56.7
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 3.4e-309 1065.1 1034 55.9
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 2.9e-308 1062.0 1032 56.2
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 4.9e-308 1061.2 1064 54.7
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 1.0e-305 1053.5 1031 53.7
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 3.9e-305 1051.6 1036 54.5
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.9e-304 1049.3 1027 55.6
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 4.9e-300 1034.6 1032 55.0
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 9.7e-288 993.8 1049 51.4
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 5.9e-277 958.0 870 57.6
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 3.9e-273 945.3 1043 50.0
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 1.5e-272 943.3 1084 49.2
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 2.8e-271 939.1 826 58.7
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 7.0e-270 934.5 763 65.0
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 7.7e-269 931.0 1119 47.1
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.1e-259 900.6 1024 48.8
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 7.0e-230 801.6 1030 45.0
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 4.3e-219 765.8 1110 41.8
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 4.4e-216 755.7 789 50.6
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 7.6e-208 728.4 1185 38.6
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 1.1e-206 724.5 1058 40.0
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 4.6e-205 719.2 939 43.8
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 4.2e-190 669.5 853 44.8
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.9e-188 662.9 476 68.1
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 9.3e-182 641.7 897 42.4
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 1.6e-178 630.9 977 41.0
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.3e-172 610.5 608 55.9
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 4.4e-147 526.6 543 52.5
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 7.2e-134 482.6 579 47.3
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.5e-123 448.4 1126 29.6
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 2.3e-116 424.5 972 31.9
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 1.9e-94 351.7 310 57.7
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 1.6e-93 348.6 663 38.3
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 2.2e-90 338.2 663 37.6
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 8.7e-87 326.2 1038 29.8
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 2.2e-82 311.6 411 45.3
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 1.8e-68 265.4 174 78.2
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 1.3e-61 242.7 153 81.0
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 9.4e-57 226.5 146 76.0
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 1.2e-56 226.1 134 85.1
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 1.4e-49 202.6 291 41.6
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 7.2e-49 200.3 161 64.0
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 7.7e-43 180.3 158 64.6
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 2.7e-40 171.8 224 50.9
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 8.5e-34 150.2 178 50.6
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 9.4e-33 146.7 106 68.9
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 1.4e-31 142.9 110 65.5
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 1.7e-29 136.0 187 43.9
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 6.5e-26 124.0 96 63.5
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 6.1e-24 117.5 130 48.5
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 8.0e-24 117.1 157 49.7
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 5.4e-20 104.4 174 40.8
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 5.9e-19 100.9 153 35.3
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.3e-18 99.8 161 40.4
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 1.2e-14 86.7 54 83.3
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 2.0e-14 85.9 52 86.5
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 3.4e-14 85.1 52 84.6
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 2.8e-13 82.0 52 75.0
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 2.8e-13 82.0 80 48.8
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 8.3e-13 80.5 65 63.1
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 1.8e-12 79.3 130 40.8
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 7.0e-12 77.4 139 38.8
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 1.2e-11 76.6 52 73.1
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 2.7e-11 75.5 77 44.2
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 3.5e-11 75.1 84 44.0
arahy.Tifrunner.gnm1.ann1.U93GY2 Arachis hypogaea HOM05D003993 ORTHO05D014907 1.3e-10 73.2 191 37.2
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 7.3e-09 67.4 71 52.1
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 7.3e-09 67.4 76 50.0
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 6.1e-08 64.3 76 48.7
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 6.1e-08 64.3 76 48.7
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 6.1e-08 64.3 76 48.7
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 1.0e-07 63.5 58 48.3
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.4e-07 63.2 76 47.4
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 1.4e-07 63.2 54 63.0
arahy.Tifrunner.gnm1.ann1.N54FIB Arachis hypogaea HOM05D003993 ORTHO05D014907 3.1e-07 62.0 125 32.8


User provided reference genes

Program Settings