Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 0.0e+00 1150.6 649 100.0
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 8.3e-293 1010.0 684 87.7
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 9.8e-193 677.6 755 58.5
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.6e-190 670.2 695 61.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.0e-189 667.5 698 62.8
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 4.2e-188 662.1 696 61.2
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 8.9e-186 654.4 695 58.0
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.2e-185 654.1 698 61.6
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 9.2e-183 644.4 626 66.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 2.3e-181 639.8 698 57.0
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 8.9e-178 627.9 698 59.9
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 5.0e-173 612.1 695 58.0
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 2.7e-134 483.4 668 52.1
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 3.3e-132 476.5 639 51.2
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.8e-130 470.7 697 44.3
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.4e-127 461.1 627 50.4
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.9e-127 460.7 674 49.0
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.6e-126 457.6 697 44.6
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.6e-126 457.6 703 43.7
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.8e-125 454.1 689 44.3
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 6.7e-125 452.2 631 49.9
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 6.7e-125 452.2 717 47.0
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 5.7e-124 449.1 686 44.5
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.6e-124 448.4 632 46.0
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 4.8e-123 446.0 694 45.5
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 8.2e-123 445.3 702 44.6
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 9.0e-122 441.8 727 43.3
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.0e-121 440.7 621 46.5
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.0e-121 440.7 623 46.5
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.0e-121 440.7 691 44.0
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 2.6e-121 440.3 588 48.8
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.7e-120 437.6 691 44.6
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.9e-120 436.8 663 43.7
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.1e-119 434.9 492 54.3
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.9e-119 434.1 589 48.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 7.2e-119 432.2 622 48.6
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.3e-119 431.8 656 44.4
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 2.7e-118 430.3 630 46.7
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 3.6e-118 429.9 685 43.2
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.1e-116 424.9 649 47.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 9.7e-116 421.8 709 42.5
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 9.7e-116 421.8 634 45.9
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 9.7e-116 421.8 723 43.2
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 8.2e-115 418.7 696 42.4
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.1e-114 418.3 688 45.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.5e-113 414.5 721 40.5
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.0e-113 414.1 725 41.7
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.5e-113 412.9 703 41.8
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 7.7e-113 412.1 606 45.5
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 7.7e-113 412.1 647 45.4
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 1.0e-112 411.8 624 47.8
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 3.8e-112 409.8 703 41.3
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 3.8e-112 409.8 709 42.0
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 3.2e-111 406.8 761 39.9
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 9.4e-111 405.2 680 42.9
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 3.6e-110 403.3 713 42.2
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 4.6e-110 402.9 642 43.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-109 401.4 341 66.6
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 2.3e-109 400.6 631 44.5
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 8.8e-109 398.7 709 41.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.1e-108 398.3 345 69.3
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 2.8e-107 393.7 637 43.0
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 3.7e-107 393.3 632 42.4
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 4.1e-106 389.8 691 40.5
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 6.9e-106 389.0 571 46.4
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.5e-105 387.9 623 44.5
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.5e-105 387.9 709 43.3
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 5.9e-105 386.0 398 55.0
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.8e-104 383.3 631 46.1
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 2.5e-103 380.6 649 45.8
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 4.2e-103 379.8 639 41.5
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.1e-102 377.5 612 42.8
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.6e-102 376.7 713 39.4
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 7.9e-102 375.6 625 42.2
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.4e-101 374.8 706 39.4
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 2.3e-101 374.0 676 42.3
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 6.7e-101 372.5 638 41.8
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.4e-100 369.8 653 41.3
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 9.7e-100 368.6 633 41.9
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.2e-99 367.5 697 43.3
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.8e-99 367.1 585 45.1
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 4.8e-99 366.3 602 43.2
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 3.5e-97 360.1 645 41.6
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 7.7e-97 359.0 603 42.0
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.5e-95 354.8 708 38.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 7.2e-95 352.4 696 41.7
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 3.6e-94 350.1 351 58.1
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 4.7e-94 349.7 734 36.2
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.4e-93 348.2 626 39.5
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.2e-93 346.3 690 41.0
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 2.6e-92 344.0 694 41.9
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.6e-92 344.0 713 41.4
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.7e-92 342.8 532 48.3
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.7e-92 342.8 532 48.3
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.7e-86 323.9 502 44.0
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 6.1e-86 322.8 605 44.5
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 2.6e-84 317.4 618 41.4
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.8e-83 313.2 336 53.6
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 8.3e-83 312.4 336 53.6
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.1e-79 302.0 509 42.4
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 1.6e-78 298.1 614 41.4
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.6e-73 281.6 334 47.9
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 8.0e-70 269.2 660 34.7
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 9.8e-52 209.1 224 54.5
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 2.1e-49 201.4 422 35.5
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.9e-45 186.0 429 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.5e-44 185.3 502 31.5
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.3e-43 182.2 224 47.3
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 2.2e-43 181.4 426 38.7
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 3.8e-43 180.6 372 37.9
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.7e-40 171.8 132 66.7
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 2.3e-40 171.4 225 50.2
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.6e-39 166.0 123 66.7
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.8e-37 161.8 112 70.5
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.1e-37 161.0 484 28.1
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.7e-35 155.2 538 29.4
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 2.9e-35 154.5 294 38.8
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.8e-35 154.1 112 67.0
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 6.4e-35 153.3 517 28.0
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 9.3e-34 149.4 119 66.4
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 3.3e-31 141.0 200 46.0
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.6e-30 137.5 118 66.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.0e-29 132.9 119 66.4
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.2e-28 132.5 417 34.5
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 2.1e-25 121.7 325 32.6
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 3.0e-24 117.9 93 68.8
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 5.1e-24 117.1 89 71.9
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.3e-22 112.5 108 50.9
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.6e-22 112.1 97 66.0
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 6.2e-22 110.2 207 36.2
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.3e-16 92.4 85 56.5
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 5.6e-15 87.0 137 42.3
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 9.6e-15 86.3 136 41.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.1e-14 85.1 348 28.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 6.2e-14 83.6 137 38.0
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-13 82.4 149 39.6
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 2.9e-11 74.7 591 22.2
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 7.1e-10 70.1 120 34.2
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.3e-07 61.2 39 71.8
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 7.4e-07 60.1 90 38.9


User provided reference genes

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