Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 5.5e-211 737.6 445 100.0
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 1.3e-207 726.5 445 98.4
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.6e-77 293.1 473 51.2
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 5.0e-71 272.7 482 46.3
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.5e-67 261.2 459 45.1
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 2.0e-67 260.8 462 50.4
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 2.0e-64 250.8 420 50.5
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 5.0e-63 246.1 517 44.3
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 1.5e-62 244.6 467 46.3
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 4.2e-62 243.0 493 44.4
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 9.4e-62 241.9 433 47.1
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 6.1e-61 239.2 452 48.5
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.8e-57 227.6 465 39.4
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 8.0e-45 185.7 449 41.2
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.5e-43 181.4 463 35.9
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 3.8e-39 166.8 453 39.3
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 5.0e-39 166.4 466 40.3
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 1.9e-38 164.5 455 35.4
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 5.2e-36 156.4 373 36.5
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 9.8e-35 152.1 444 33.3
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.3e-34 151.8 382 37.4
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 2.9e-34 150.6 432 33.6
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.2e-32 145.2 415 34.2
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 9.5e-30 135.6 372 35.5
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.7e-29 133.3 458 34.5
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 1.0e-28 132.1 464 33.6
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.3e-28 131.0 363 33.9
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 2.3e-28 131.0 568 30.5
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 8.9e-28 129.0 492 34.3
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 9.8e-27 125.6 345 33.9
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 2.9e-26 124.0 409 32.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 6.4e-26 122.9 366 33.6
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 8.3e-26 122.5 385 32.7
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.6e-24 118.2 364 36.0
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.6e-24 116.7 129 52.7
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.0e-23 115.5 483 31.7
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.0e-23 115.5 448 30.8
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.3e-23 114.4 354 34.2
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.3e-23 114.4 129 51.9
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 3.0e-23 114.0 435 32.0
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.0e-23 114.0 358 33.8
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.0e-23 114.0 410 31.2
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 5.0e-23 113.2 599 27.4
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.0e-23 113.2 409 31.3
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 6.6e-23 112.8 435 34.3
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.1e-22 112.1 407 32.7
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.2e-21 108.6 219 38.4
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.6e-21 108.2 376 32.2
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 2.8e-21 107.5 400 31.5
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 4.7e-21 106.7 358 33.2
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.7e-21 106.7 218 37.6
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 6.2e-21 106.3 398 36.2
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.4e-20 105.1 353 30.9
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 3.1e-20 104.0 512 29.5
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.5e-19 101.7 338 31.7
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 2.0e-19 101.3 491 29.1
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 2.6e-19 100.9 369 32.0
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 9.8e-19 99.0 109 57.8
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.3e-18 98.6 123 48.0
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.7e-18 98.2 123 48.0
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 3.7e-18 97.1 422 31.3
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 4.9e-18 96.7 122 54.1
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 4.9e-18 96.7 122 54.1
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 4.9e-18 96.7 122 54.1
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.1e-17 95.5 507 28.2
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 2.4e-17 94.4 394 31.5
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 9.2e-17 92.4 428 28.0
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 2.1e-16 91.3 116 49.1
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.1e-16 91.3 68 63.2
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.1e-16 91.3 68 63.2
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 4.6e-16 90.1 424 28.1
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 4.6e-16 90.1 429 27.5
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 6.0e-16 89.7 437 30.4
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 3.9e-15 87.0 397 28.5
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.1e-14 85.5 399 29.1
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 1.5e-14 85.1 391 29.7
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.2e-13 82.0 79 59.5
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.6e-13 81.6 328 31.1
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 1.6e-13 81.6 464 27.6
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 3.6e-13 80.5 416 26.9
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 3.6e-13 80.5 416 26.9
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 3.6e-13 80.5 416 26.9
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 6.2e-13 79.7 385 28.1
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.3e-12 77.8 380 27.9
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.3e-12 77.8 136 45.6
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 5.2e-12 76.6 422 28.0
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 6.8e-12 76.3 143 42.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 6.8e-12 76.3 413 28.3
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 8.9e-12 75.9 391 26.9
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.2e-11 75.5 323 28.2
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 1.5e-11 75.1 452 27.4
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 2.6e-11 74.3 360 28.1
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 3.4e-11 73.9 387 27.1
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 7.6e-11 72.8 288 33.0
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 7.6e-11 72.8 141 41.8
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 9.9e-11 72.4 384 25.8
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 9.9e-11 72.4 399 27.3
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.7e-10 71.6 92 54.3
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.2e-10 71.2 363 29.5
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 3.7e-10 70.5 111 45.9
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 6.4e-10 69.7 314 27.1
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 1.4e-09 68.6 341 28.2
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 1.9e-09 68.2 133 40.6
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 2.4e-09 67.8 133 40.6
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 4.1e-09 67.0 381 26.2
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 5.4e-09 66.6 386 26.2
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 1.6e-08 65.1 66 62.1
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 1.6e-08 65.1 66 62.1
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.6e-08 65.1 422 29.9
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 4.6e-08 63.5 385 26.0
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 7.8e-08 62.8 316 29.4
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.7e-07 61.6 385 25.5
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.7e-07 61.6 399 26.3
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 8.6e-07 59.3 397 24.4
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 1.9e-06 58.2 388 24.7
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 2.5e-06 57.8 398 25.6
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.6e-06 56.6 56 57.1
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 9.6e-06 55.8 453 26.7


User provided reference genes

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