Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.3e-271 939.1 486 100.0
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 8.5e-266 919.8 487 98.4
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.4e-199 699.9 440 80.2
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 5.2e-199 698.0 420 82.4
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 2.9e-197 692.2 413 82.6
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 8.4e-197 690.6 414 82.6
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 5.4e-196 688.0 420 82.1
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 2.7e-195 685.6 410 83.4
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 1.4e-191 673.3 420 82.4
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 1.8e-191 672.9 420 81.9
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 9.9e-182 640.6 411 77.9
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 4.2e-180 635.2 414 76.3
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 2.7e-179 632.5 418 75.4
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 2.5e-177 625.9 420 74.8
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 3.3e-177 625.5 420 74.8
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 7.4e-177 624.4 420 74.8
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 8.1e-176 620.9 440 72.3
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 6.9e-175 617.8 427 72.6
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 1.5e-174 616.7 414 72.5
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 4.5e-174 615.1 420 72.9
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 5.8e-174 614.8 405 75.6
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 3.8e-173 612.1 420 73.1
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 8.4e-173 610.9 418 73.0
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 8.4e-173 610.9 420 72.9
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.9e-172 609.8 418 72.7
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.9e-172 609.8 418 73.0
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 7.9e-171 604.4 420 72.1
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 8.7e-170 600.9 407 74.0
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 3.3e-169 599.0 407 72.7
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 3.3e-169 599.0 420 71.7
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 3.3e-169 599.0 417 73.9
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.6e-168 596.7 407 72.7
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 8.1e-168 594.3 418 71.5
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 8.1e-168 594.3 416 72.6
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 3.1e-167 592.4 421 71.5
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 1.5e-166 590.1 409 71.1
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 2.0e-166 589.7 471 68.2
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.4e-166 589.0 408 72.3
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 3.4e-166 589.0 416 70.2
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 3.4e-166 589.0 413 70.2
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 1.3e-165 587.0 416 69.7
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.3e-165 587.0 415 70.6
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 2.9e-165 585.9 412 69.9
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 1.9e-164 583.2 412 69.4
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 7.1e-164 581.3 408 69.6
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.2e-163 580.5 420 70.7
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 2.1e-163 579.7 422 69.2
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 2.1e-163 579.7 418 69.4
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 2.7e-163 579.3 414 69.3
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.5e-163 578.9 461 65.7
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 4.6e-163 578.6 409 68.7
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 7.9e-163 577.8 416 69.2
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 8.7e-162 574.3 416 68.8
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.5e-161 573.5 416 68.3
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 2.5e-161 572.8 445 65.6
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 2.5e-161 572.8 409 69.7
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 2.5e-161 572.8 413 69.2
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 4.3e-161 572.0 445 65.6
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 5.7e-161 571.6 417 68.3
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 7.4e-161 571.2 445 65.8
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.6e-160 570.1 412 68.9
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.8e-160 569.3 418 68.2
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 2.8e-160 569.3 415 68.9
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.8e-160 568.5 421 67.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 8.2e-160 567.8 426 66.7
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 5.3e-159 565.1 418 67.2
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 4.5e-158 562.0 417 67.1
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 3.8e-157 558.9 419 67.8
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 8.5e-157 557.8 411 68.4
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 1.4e-156 557.0 405 68.6
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 2.5e-153 546.2 420 66.7
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.3e-153 545.8 448 64.1
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 7.4e-153 544.7 462 61.5
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 1.6e-152 543.5 416 67.1
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 8.2e-152 541.2 478 60.3
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 1.5e-150 537.0 455 63.1
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.6e-147 525.8 441 63.9
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 1.0e-146 524.2 382 69.9
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 1.8e-146 523.5 443 62.1
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 3.3e-145 519.2 408 66.7
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 4.4e-145 518.8 422 62.6
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 3.7e-144 515.8 408 66.2
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.8e-143 513.5 420 64.3
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 2.4e-143 513.1 334 75.7
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 7.7e-142 508.1 401 66.1
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.3e-141 507.3 446 59.2
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 4.2e-140 502.3 411 60.1
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 5.5e-140 501.9 408 64.2
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 2.7e-139 499.6 455 55.8
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 6.1e-139 498.4 481 56.5
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 8.8e-138 494.6 412 60.7
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 4.4e-137 492.3 423 60.0
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.3e-136 490.7 346 72.8
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 7.7e-134 481.5 360 67.2
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 6.1e-131 471.9 310 75.5
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 2.8e-128 463.0 426 55.9
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 3.0e-122 443.0 264 83.0
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 1.6e-118 430.6 322 70.8
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 2.1e-115 420.2 410 54.4
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.4e-113 412.9 287 72.5
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 2.4e-111 406.8 244 84.8
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 8.9e-106 388.3 285 66.7
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 3.0e-101 373.2 414 51.2
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 7.3e-100 368.6 420 47.6
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 3.6e-99 366.3 410 51.2
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 2.3e-98 363.6 426 47.4
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.0e-93 346.7 218 80.3
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 8.3e-88 328.6 318 56.9
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.9e-87 327.4 212 78.3
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 6.6e-85 318.9 242 66.1
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 5.6e-84 315.8 264 61.4
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.4e-79 301.2 310 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 2.4e-79 300.4 382 45.8
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.9e-77 293.1 292 54.1
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.9e-76 290.8 361 49.0
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 1.6e-62 244.6 225 58.7
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 3.7e-59 233.4 402 37.3
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.4e-58 231.5 148 76.4
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 4.0e-58 229.9 166 69.9
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.3e-53 214.9 137 75.2
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.9e-52 211.1 163 66.9
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.0e-50 203.4 179 58.7
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.7e-48 198.0 125 76.8
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 2.2e-43 181.0 405 33.8
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.2e-38 165.2 306 35.6
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 6.3e-35 152.9 117 71.8
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.4e-34 151.0 101 68.3
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.5e-33 148.3 88 81.8
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.0e-32 145.6 106 71.7
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 5.1e-29 133.3 180 44.4
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.6e-22 110.5 360 27.8
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 6.1e-22 109.8 207 34.3
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.1e-18 97.1 109 45.9
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.0e-16 92.4 65 72.3
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.8e-16 90.5 113 49.6
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 5.5e-15 86.7 54 75.9
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 6.7e-13 79.7 79 53.2


User provided reference genes

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