Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 0.0e+00 1307.4 660 100.0
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 0.0e+00 1301.6 660 99.2
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.1e-279 966.5 659 73.0
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 1.5e-278 962.6 659 73.4
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.4e-278 961.4 664 73.3
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 1.8e-274 949.1 646 71.8
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 5.2e-274 947.6 654 72.3
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.8e-272 941.8 656 71.3
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 2.8e-272 941.8 657 70.5
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 7.7e-270 933.7 659 71.3
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.0e-269 933.3 658 71.6
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 2.6e-257 892.1 615 71.4
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 1.3e-256 889.8 649 67.5
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.1e-255 886.7 646 66.9
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.8e-255 885.9 646 67.5
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 4.1e-255 884.8 645 66.0
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 4.1e-255 884.8 649 67.3
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.2e-254 883.2 645 66.0
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 7.7e-254 880.6 650 66.5
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.7e-253 879.4 643 66.4
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.8e-253 878.2 645 66.8
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 6.5e-253 877.5 650 66.9
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 8.5e-253 877.1 654 65.9
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 1.1e-252 876.7 659 66.0
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.5e-252 876.3 650 66.3
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.9e-252 875.9 649 65.8
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 5.5e-252 874.4 649 66.4
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 5.5e-252 874.4 660 66.4
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 6.1e-251 870.9 661 65.2
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 1.0e-250 870.2 661 65.2
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.8e-249 863.6 661 65.2
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 3.7e-248 861.7 650 65.8
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.1e-247 860.1 646 64.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 5.4e-247 857.8 654 65.0
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 7.0e-247 857.4 658 63.1
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 5.9e-246 854.4 660 64.2
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.0e-245 853.6 654 64.8
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 4.0e-242 841.6 659 63.3
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.2e-241 840.1 644 62.6
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 7.5e-241 837.4 660 63.6
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.3e-240 836.6 661 63.5
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 3.7e-240 835.1 652 63.8
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.8e-239 832.8 650 64.3
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.4e-239 832.4 660 62.7
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.2e-238 830.1 651 64.1
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 2.3e-234 815.8 646 62.7
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 8.9e-234 813.9 662 61.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.2e-233 813.5 642 62.3
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.2e-233 813.5 642 62.3
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.2e-233 813.5 580 67.4
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 2.0e-233 812.8 664 62.3
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 3.4e-233 812.0 661 61.9
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 4.4e-233 811.6 664 62.2
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 5.8e-233 811.2 642 62.1
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 1.7e-232 809.7 646 62.8
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 2.9e-232 808.9 617 64.8
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 4.9e-232 808.1 642 62.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 8.3e-232 807.4 662 61.6
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.1e-231 807.0 656 62.2
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 1.9e-231 806.2 646 62.2
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 4.1e-231 805.1 642 62.1
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 4.1e-231 805.1 653 61.3
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 4.1e-231 805.1 642 62.5
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 5.4e-231 804.7 642 62.3
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.0e-230 802.7 646 62.4
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 3.5e-230 802.0 642 61.7
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 3.5e-230 802.0 660 60.5
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 7.8e-230 800.8 651 61.3
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 3.9e-229 798.5 659 61.6
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 5.6e-228 794.7 653 61.6
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 3.6e-227 792.0 642 61.2
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 3.6e-227 792.0 654 61.6
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.1e-226 790.4 642 62.3
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 5.8e-225 784.6 648 60.3
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.0e-221 773.9 661 60.2
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 3.6e-219 765.4 639 59.9
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 1.1e-218 763.8 641 59.8
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 3.8e-216 755.4 641 59.4
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 4.1e-215 751.9 642 58.6
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.5e-214 748.8 661 57.0
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 7.8e-214 747.7 641 58.7
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 3.0e-213 745.7 656 58.7
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 2.5e-212 742.7 641 58.3
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 4.0e-210 735.3 654 58.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 5.2e-210 734.9 684 56.4
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 5.8e-209 731.5 659 57.1
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 9.9e-201 704.1 647 56.7
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 2.9e-200 702.6 566 62.4
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.0e-190 668.3 522 61.1
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 1.1e-186 657.5 660 54.4
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 6.0e-182 641.7 559 58.1
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.3e-181 639.8 620 55.2
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 3.7e-179 632.5 648 52.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 6.3e-179 631.7 632 51.9
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.5e-177 627.1 651 52.7
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 3.3e-172 609.4 651 53.6
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.4e-162 576.6 661 47.2
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 9.1e-154 548.1 339 86.4
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.2e-153 547.7 574 52.1
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 7.7e-153 545.0 675 43.7
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 5.0e-152 542.3 664 44.7
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 4.2e-151 539.3 446 60.1
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.6e-150 537.3 494 55.3
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 5.3e-146 522.3 666 42.0
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.0e-144 518.1 650 45.8
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 9.5e-119 431.8 638 37.6
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 2.1e-102 377.5 353 60.6
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.0e-77 292.4 224 62.9
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.9e-69 266.2 185 76.8
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 1.5e-47 195.3 282 43.6
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.1e-45 187.6 99 94.9
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 2.0e-44 184.9 106 82.1
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 5.9e-44 183.3 106 82.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 8.5e-43 179.5 122 69.7
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 3.0e-40 171.0 143 59.4
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.7e-40 169.9 91 94.5
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 4.4e-39 167.2 168 53.0
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 9.7e-39 166.0 158 51.9
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 4.5e-36 157.1 110 70.9
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 3.6e-33 147.5 85 82.4
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.1e-33 146.7 157 46.5
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 1.4e-32 145.6 109 66.1
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 2.2e-30 138.3 220 34.1
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 8.3e-30 136.3 162 44.4
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.8e-29 135.2 157 45.9
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 4.2e-26 124.0 83 73.5
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 3.6e-25 120.9 103 60.2
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-23 115.9 79 70.9
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 9.8e-23 112.8 57 91.2
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.8e-21 108.6 56 91.1
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.1e-18 99.4 541 22.4
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 2.1e-17 95.1 86 54.7
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.2e-15 89.4 59 72.9
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 3.7e-14 84.3 226 27.0
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 4.1e-13 80.9 86 51.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 1.6e-09 68.9 48 66.7


User provided reference genes

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