Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 7.9e-80 300.4 157 100.0
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.8e-50 201.8 105 95.2
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.9e-49 199.5 105 94.3
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 4.2e-49 198.4 105 93.3
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 5.5e-49 198.0 105 93.3
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 6.1e-48 194.5 105 89.5
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.3e-47 192.6 105 91.4
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 3.9e-47 191.8 125 80.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.9e-47 191.8 105 88.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 5.1e-47 191.4 104 86.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.7e-47 191.0 105 88.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.1e-46 190.3 105 91.4
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.0e-46 189.5 105 87.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.0e-46 189.5 105 87.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.0e-46 189.5 105 85.7
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 2.6e-46 189.1 105 86.7
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 3.3e-46 188.7 105 87.6
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.3e-46 188.7 105 86.7
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.3e-46 188.7 105 86.7
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 4.4e-46 188.3 105 87.6
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 4.4e-46 188.3 105 88.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 5.7e-46 188.0 105 86.7
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.7e-46 188.0 105 87.6
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 5.7e-46 188.0 105 87.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.4e-46 187.6 105 84.8
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.3e-45 186.8 105 87.6
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.3e-45 186.8 105 89.5
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.3e-45 186.8 105 89.5
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.7e-45 186.4 105 85.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.2e-45 186.0 105 84.8
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 2.8e-45 185.7 105 87.6
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.7e-45 185.3 105 83.8
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 3.7e-45 185.3 105 85.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 4.8e-45 184.9 105 82.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 4.8e-45 184.9 105 85.7
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.8e-45 184.9 105 85.7
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 6.3e-45 184.5 105 85.7
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 8.2e-45 184.1 105 84.8
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 8.2e-45 184.1 105 84.8
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.1e-44 183.7 105 83.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.1e-44 183.7 105 83.8
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.1e-44 183.7 105 83.8
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.4e-44 183.3 105 84.8
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.4e-44 183.3 105 83.8
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.4e-44 183.3 105 82.9
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.4e-44 183.3 105 83.8
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.8e-44 183.0 105 83.8
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.8e-44 183.0 105 82.9
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 2.4e-44 182.6 105 83.8
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.4e-44 182.6 104 82.7
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.4e-44 182.6 105 84.8
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.4e-44 182.6 105 84.8
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.4e-44 182.6 104 84.6
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 3.1e-44 182.2 105 82.9
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 3.1e-44 182.2 105 80.0
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 4.1e-44 181.8 105 82.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 4.1e-44 181.8 104 83.7
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 5.3e-44 181.4 105 81.9
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 5.3e-44 181.4 105 81.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 5.3e-44 181.4 105 81.9
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 5.3e-44 181.4 105 81.9
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.9e-44 181.0 105 82.9
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 6.9e-44 181.0 104 82.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.9e-44 181.0 105 81.9
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.9e-44 181.0 105 81.9
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 9.1e-44 180.6 105 81.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 9.1e-44 180.6 105 81.0
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 9.1e-44 180.6 105 82.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-43 179.9 105 81.9
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.0e-43 179.5 124 72.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.6e-43 179.1 105 81.0
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.6e-43 179.1 105 81.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-43 179.1 105 81.9
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.6e-43 179.1 113 77.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.4e-43 178.7 105 80.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.4e-43 178.7 105 80.0
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 3.4e-43 178.7 105 83.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.4e-43 178.7 105 81.0
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 4.5e-43 178.3 105 81.9
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 4.5e-43 178.3 105 81.9
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 5.9e-43 177.9 105 80.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.9e-43 177.9 105 81.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 5.9e-43 177.9 105 81.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.7e-43 177.6 103 81.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 7.7e-43 177.6 105 80.0
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 7.7e-43 177.6 105 80.0
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-42 177.2 105 79.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.0e-42 177.2 105 81.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.3e-42 176.8 105 81.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.3e-42 176.8 105 79.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.7e-42 176.4 103 82.5
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.2e-42 176.0 272 40.4
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.2e-42 176.0 105 81.0
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.9e-42 175.6 105 79.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.8e-42 175.3 105 81.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.0e-42 174.9 105 81.9
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.5e-42 174.5 105 79.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 8.5e-42 174.1 105 82.9
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-41 173.7 105 79.0
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.5e-41 172.6 105 79.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.2e-41 171.8 105 74.3
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.5e-41 171.4 126 71.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.6e-40 169.9 105 80.0
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.1e-40 169.5 102 75.5
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.4e-39 166.8 109 75.2
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.8e-39 166.4 105 78.1
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.8e-39 166.4 105 75.2
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.3e-39 166.0 105 77.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 3.9e-39 165.2 142 59.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.7e-39 164.5 103 76.7
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 8.8e-39 164.1 103 76.7
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 4.4e-38 161.8 105 77.1
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.4e-38 161.0 102 75.5
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.8e-37 159.1 105 71.4
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.8e-37 159.1 102 73.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.1e-36 157.1 97 73.2
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.4e-36 156.0 89 82.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.6e-35 153.3 105 67.6
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.5e-33 146.7 121 61.2
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 8.8e-31 137.5 74 91.9
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-30 136.7 103 63.1
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-28 130.6 105 61.9
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-28 130.6 105 61.9
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-28 130.2 105 61.9
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.4e-28 129.4 105 61.0
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.1e-28 128.6 105 60.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 5.3e-28 128.3 110 60.0
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.3e-28 128.3 80 75.0
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-26 123.6 167 43.7
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-25 120.6 104 59.6
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.1e-25 120.6 63 88.9
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.2e-25 118.6 105 58.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 5.5e-25 118.2 144 45.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.2e-25 117.9 182 44.5
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.6e-24 115.5 184 43.5
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.0e-23 112.5 106 55.7
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 6.8e-23 111.3 105 52.4
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.0e-22 109.8 95 57.9
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.0e-22 109.8 105 52.4
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 5.5e-17 91.7 53 83.0
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 7.0e-12 74.7 42 85.7
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.7e-11 72.8 116 40.5
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.0e-10 68.6 42 76.2
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.1e-08 63.2 194 26.8
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 3.0e-07 59.3 45 68.9
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.2e-07 58.5 46 54.3
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.2e-07 58.5 63 50.8
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 6.8e-07 58.2 89 33.7
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.9e-07 57.8 45 66.7
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 2.0e-06 56.6 37 75.7
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 4.4e-06 55.5 45 66.7
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.5e-06 54.7 36 72.2
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 7.5e-06 54.7 36 75.0


User provided reference genes

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