Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 6.3e-151 537.3 261 100.0
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 7.8e-117 424.1 257 82.5
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.7e-87 326.6 265 61.9
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.9e-86 323.2 271 60.1
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.2e-86 322.4 265 59.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.3e-84 317.0 269 59.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.5e-83 313.5 266 59.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 3.3e-83 312.4 266 58.6
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.2e-82 309.7 262 58.8
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.7e-82 308.9 262 58.8
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 9.0e-81 304.3 262 58.4
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.9e-80 301.6 259 58.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 7.7e-80 301.2 234 62.0
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.9e-79 299.3 271 54.6
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.8e-79 298.9 262 55.7
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.8e-79 298.9 265 57.0
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 5.0e-79 298.5 271 55.0
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 9.4e-78 294.3 264 57.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 9.4e-78 294.3 258 55.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 9.4e-78 294.3 265 56.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.6e-77 293.5 265 55.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.6e-77 293.5 262 56.5
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 2.7e-77 292.7 271 53.9
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 2.7e-77 292.7 271 53.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 3.6e-77 292.4 262 56.9
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.6e-77 292.4 262 56.9
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.6e-77 292.4 262 58.0
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.6e-77 292.4 262 56.9
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.6e-77 292.0 262 57.3
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.1e-77 291.6 265 56.6
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 7.9e-77 291.2 243 60.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.8e-76 290.0 262 55.0
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.8e-76 290.0 282 52.8
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.3e-76 289.7 262 54.2
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.3e-76 289.7 264 53.8
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 5.1e-76 288.5 264 54.2
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 6.7e-76 288.1 269 52.4
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.5e-75 287.0 271 52.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.5e-75 287.0 262 55.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.0e-75 286.6 271 51.7
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.0e-75 286.6 271 52.0
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 5.7e-75 285.0 262 53.8
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.7e-75 284.3 271 51.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.3e-74 283.9 269 53.5
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.3e-74 283.9 254 55.1
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.7e-74 283.5 262 52.3
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.8e-73 280.0 262 51.9
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.4e-73 279.6 262 52.3
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 5.3e-73 278.5 262 54.2
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 9.1e-73 277.7 271 51.3
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.4e-72 275.8 264 50.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 3.4e-72 275.8 262 54.2
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 4.5e-72 275.4 262 52.3
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.3e-71 273.9 265 50.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.7e-71 273.5 244 54.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.7e-71 273.5 272 50.0
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 5.0e-71 271.9 262 51.1
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 6.5e-71 271.6 269 49.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.4e-70 270.4 264 51.1
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.5e-70 269.6 262 51.9
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 7.2e-70 268.1 265 50.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.2e-69 267.3 265 50.6
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.1e-69 265.0 262 51.9
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.1e-69 265.0 262 51.1
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.1e-69 265.0 267 50.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-68 263.8 267 50.2
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.4e-68 263.8 262 48.5
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.8e-68 263.5 245 55.1
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 3.9e-68 262.3 264 50.8
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 8.8e-68 261.2 247 52.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 8.8e-68 261.2 269 50.2
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-67 260.4 243 53.1
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-66 256.9 268 50.0
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.8e-66 256.1 298 42.3
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-66 255.8 250 52.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 4.8e-66 255.4 250 53.2
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 4.8e-66 255.4 268 50.0
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 6.3e-66 255.0 252 52.8
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.8e-65 253.4 262 50.4
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.1e-65 252.7 278 47.5
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-65 252.3 250 52.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 7.0e-65 251.5 223 56.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-64 250.4 250 52.4
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.6e-64 250.4 263 51.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.5e-64 249.2 262 50.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-64 248.8 268 49.3
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-64 248.8 250 52.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.5e-64 248.8 250 52.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.0e-63 247.7 262 49.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.7e-63 246.9 225 52.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-63 246.1 244 51.6
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.9e-63 246.1 253 47.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.9e-63 246.1 262 48.9
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.0e-63 245.4 270 49.3
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-63 244.6 264 48.9
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.5e-62 243.8 243 48.6
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.9e-62 243.4 267 48.3
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-62 243.0 262 47.7
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.5e-62 241.9 262 48.5
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.2e-61 240.7 262 46.9
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 8.0e-61 238.0 262 47.7
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-60 236.5 262 47.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 3.0e-60 236.1 240 47.9
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 8.8e-60 234.6 244 50.0
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 8.8e-60 234.6 262 47.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.5e-59 233.8 252 50.4
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 5.7e-59 231.9 146 71.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 7.5e-59 231.5 243 49.8
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-58 230.7 247 48.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.1e-57 226.1 263 44.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-57 226.1 249 47.8
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 7.0e-57 224.9 262 46.6
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.2e-53 214.2 222 49.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 6.1e-53 211.8 287 43.2
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 5.2e-52 208.8 271 43.5
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.4e-51 206.1 271 39.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-49 201.1 220 48.2
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.8e-49 200.3 221 48.0
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.9e-48 195.3 267 40.4
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.0e-47 194.5 112 77.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.2e-45 187.6 112 72.3
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.8e-44 181.8 216 47.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.7e-42 177.2 222 41.4
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 8.3e-42 174.9 262 37.4
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.6e-40 170.6 194 47.4
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 5.6e-38 162.2 204 45.1
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.9e-34 149.8 181 46.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.0e-31 141.4 211 34.1
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 6.6e-31 138.7 77 72.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 6.6e-31 138.7 77 72.7
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-28 131.0 181 44.8
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 7.5e-27 125.2 241 31.5
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.8e-20 104.0 54 75.9
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 3.1e-20 103.2 103 52.4
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.0e-19 100.5 48 87.5
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 2.6e-19 100.1 81 63.0
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-14 84.3 84 47.6
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 7.3e-14 82.0 166 35.5
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 3.6e-13 79.7 94 44.7
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-10 70.5 72 51.4
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.4e-09 67.0 134 33.6
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 7.1e-09 65.5 159 31.4
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.1e-09 65.5 141 31.9
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-08 63.9 99 38.4
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.5e-08 63.2 132 31.8
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.8e-08 62.0 146 30.8
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 8.6e-07 58.5 32 75.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 8.6e-07 58.5 99 35.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.3e-06 56.6 32 75.0
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.3e-06 56.6 30 80.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.3e-06 56.6 30 80.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.3e-06 56.6 63 44.4
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 7.3e-06 55.5 45 53.3
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.3e-06 55.5 63 44.4
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 9.6e-06 55.1 32 68.8


User provided reference genes

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