Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-59 231.9 113 100.0
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.4e-25 119.8 114 58.8
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 3.0e-25 118.6 114 57.9
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.4e-24 115.2 136 54.4
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.4e-24 114.8 114 58.8
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.5e-21 105.1 115 54.8
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 5.9e-21 104.4 111 57.7
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 7.8e-21 104.0 115 53.9
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.7e-20 102.8 115 54.8
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 5.0e-20 101.3 115 53.0
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.3e-19 98.6 113 51.3
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 4.3e-19 98.2 115 52.2
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 4.3e-19 98.2 118 50.8
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.1e-18 95.9 115 49.6
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.1e-18 95.9 110 50.9
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.7e-18 94.7 114 48.2
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 6.2e-18 94.4 114 49.1
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.0e-18 94.0 112 49.1
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.0e-18 94.0 112 49.1
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 8.0e-18 94.0 114 48.2
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.8e-17 92.8 116 49.1
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.3e-17 92.4 118 46.6
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.3e-17 92.4 112 48.2
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.1e-17 92.0 114 48.2
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 4.0e-17 91.7 115 47.8
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.0e-17 91.7 113 47.8
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 4.0e-17 91.7 111 49.5
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 5.2e-17 91.3 111 46.8
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 6.8e-17 90.9 113 46.9
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 6.8e-17 90.9 113 48.7
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 8.9e-17 90.5 115 47.0
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.2e-16 90.1 112 47.3
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-16 90.1 118 46.6
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.2e-16 90.1 114 46.5
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.2e-16 90.1 112 49.1
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-16 89.4 113 46.9
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-16 89.4 115 48.7
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.0e-16 89.4 115 47.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.0e-16 89.4 117 44.4
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.6e-16 89.0 112 46.4
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.6e-16 89.0 115 47.8
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-16 89.0 115 47.8
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-16 89.0 115 48.7
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.4e-16 88.2 111 47.7
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.8e-16 87.8 110 46.4
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 5.8e-16 87.8 114 43.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 7.5e-16 87.4 115 46.1
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 7.5e-16 87.4 116 44.8
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 9.8e-16 87.0 115 46.1
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 9.8e-16 87.0 115 46.1
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.8e-16 87.0 115 47.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.3e-15 86.7 115 45.2
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.3e-15 86.7 116 44.0
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.3e-15 86.7 109 47.7
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.7e-15 86.3 118 44.9
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.7e-15 86.3 111 46.8
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 2.2e-15 85.9 109 45.9
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.2e-15 85.9 116 44.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 2.9e-15 85.5 113 46.0
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.7e-15 85.1 115 46.1
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 4.9e-15 84.7 112 45.5
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.4e-15 84.3 112 44.6
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 6.4e-15 84.3 112 44.6
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 8.3e-15 84.0 113 46.0
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.4e-14 83.2 113 46.0
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.4e-14 83.2 114 44.7
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.4e-14 83.2 113 42.5
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.9e-14 82.8 117 43.6
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.4e-14 82.4 115 44.3
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 2.4e-14 82.4 115 44.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 3.2e-14 82.0 115 45.2
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.2e-14 82.0 112 42.9
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 4.1e-14 81.6 112 43.8
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 4.1e-14 81.6 110 40.9
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 5.4e-14 81.3 118 40.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 5.4e-14 81.3 118 40.7
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 5.4e-14 81.3 115 43.5
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 7.0e-14 80.9 115 43.5
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 7.0e-14 80.9 115 43.5
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 7.0e-14 80.9 112 43.8
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.0e-14 80.9 118 43.2
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 9.2e-14 80.5 118 40.7
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 9.2e-14 80.5 118 40.7
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-13 80.1 118 40.7
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.2e-13 80.1 115 42.6
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.2e-13 80.1 117 42.7
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.6e-13 79.7 120 40.8
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.6e-13 79.7 103 44.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.0e-13 79.3 115 43.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 2.0e-13 79.3 115 43.5
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 2.0e-13 79.3 115 43.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.0e-13 79.3 112 42.9
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.7e-13 79.0 115 42.6
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 2.7e-13 79.0 102 48.0
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 3.5e-13 78.6 110 40.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.6e-13 78.2 115 41.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.6e-13 78.2 115 40.0
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 6.0e-13 77.8 118 39.0
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 7.8e-13 77.4 113 41.6
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.3e-12 76.6 114 37.7
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.7e-12 76.3 114 37.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.3e-12 75.9 109 44.0
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.3e-12 75.9 114 39.5
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 5.0e-12 74.7 115 41.7
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.0e-12 74.7 112 42.0
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 5.0e-12 74.7 115 41.7
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.6e-12 74.3 113 38.1
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 6.6e-12 74.3 114 37.7
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 8.6e-12 73.9 101 42.6
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.1e-11 73.6 130 40.8
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.5e-11 73.2 115 40.9
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.9e-11 72.8 102 39.2
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 4.3e-11 71.6 115 40.9
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.3e-11 71.6 118 43.2
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 5.6e-11 71.2 114 40.4
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.2e-10 67.8 107 42.1
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.1e-10 67.4 129 34.9
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.1e-09 67.0 105 38.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.1e-09 67.0 100 44.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 1.8e-09 66.2 113 38.9
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 4.0e-09 65.1 50 60.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.5e-08 63.2 46 65.2
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 4.4e-08 61.6 110 38.2
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 4.4e-08 61.6 107 32.7
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.9e-07 58.9 96 43.8
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 6.4e-07 57.8 50 50.0
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.4e-06 54.7 49 55.1
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 7.1e-06 54.3 121 31.4
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 9.2e-06 53.9 109 31.2


User provided reference genes

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