Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.6e-98 362.8 192 100.0
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.6e-96 354.4 192 98.4
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.6e-96 354.4 192 98.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 4.0e-86 321.6 189 87.8
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.5e-85 319.7 192 88.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.0e-85 319.3 196 86.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.4e-85 318.5 195 87.2
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 9.9e-85 317.0 191 84.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.2e-84 315.8 191 86.9
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 3.8e-84 315.1 190 86.3
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.4e-84 314.3 187 87.7
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 6.4e-84 314.3 185 87.6
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 8.4e-84 313.9 183 88.0
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.4e-84 313.9 184 88.0
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 8.4e-84 313.9 191 84.8
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.4e-83 313.2 191 84.8
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.4e-83 312.4 181 89.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.2e-83 312.0 190 85.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.2e-83 312.0 190 85.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 4.2e-83 311.6 191 84.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 5.4e-83 311.2 186 87.1
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.2e-82 310.1 184 85.9
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 3.5e-82 308.5 190 82.6
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 3.5e-82 308.5 187 83.4
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 3.5e-82 308.5 191 85.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.6e-82 308.1 190 84.7
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.6e-82 308.1 190 84.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 7.9e-82 307.4 189 84.7
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.3e-81 306.6 186 86.6
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.8e-81 306.2 191 82.7
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.3e-81 305.8 185 84.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.0e-81 305.4 177 88.1
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.0e-81 305.4 188 85.1
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.1e-81 304.7 188 83.5
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 5.1e-81 304.7 182 86.3
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.7e-81 304.3 183 86.3
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-80 303.5 191 82.2
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 3.3e-80 302.0 181 85.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.3e-80 302.0 183 85.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.3e-80 301.6 188 83.5
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 4.3e-80 301.6 189 81.5
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 7.4e-80 300.8 198 80.3
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.4e-80 300.8 184 84.8
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.3e-79 300.1 192 81.8
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.3e-79 300.1 183 83.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.6e-79 299.7 184 85.3
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-79 299.3 191 81.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.8e-79 298.9 194 82.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.8e-79 298.9 193 82.4
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.7e-79 298.5 189 82.0
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 8.1e-79 297.4 189 81.5
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.1e-78 297.0 181 84.0
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.4e-78 296.6 199 77.4
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.4e-78 296.6 186 81.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.8e-78 296.2 186 82.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.8e-78 296.2 185 84.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 3.1e-78 295.4 186 81.7
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 4.0e-78 295.0 182 82.4
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.3e-78 294.7 188 83.0
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 6.9e-78 294.3 185 82.7
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 6.9e-78 294.3 186 81.7
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 9.0e-78 293.9 189 81.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 9.0e-78 293.9 189 81.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.2e-77 293.5 191 80.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.0e-77 292.7 174 85.1
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.4e-77 292.0 193 79.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.5e-77 291.6 178 83.1
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.5e-77 291.6 188 79.3
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.8e-77 291.2 188 80.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 5.8e-77 291.2 189 79.4
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 7.6e-77 290.8 189 78.8
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 7.6e-77 290.8 188 79.3
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 9.9e-77 290.4 186 80.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.9e-77 290.4 181 81.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.3e-76 290.0 187 80.7
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 80.1
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 80.1
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 80.1
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 80.1
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.8e-76 288.5 188 79.3
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 6.4e-76 287.7 179 81.6
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 8.4e-76 287.3 189 78.3
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 8.4e-76 287.3 189 78.3
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 8.4e-76 287.3 183 80.9
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.1e-75 287.0 183 80.9
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.4e-75 286.6 189 78.3
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.9e-75 286.2 189 77.8
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 174 82.2
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.9e-75 286.2 228 70.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.4e-75 285.8 184 81.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 7.1e-75 284.3 184 77.2
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 9.3e-75 283.9 183 79.2
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.2e-74 283.5 185 77.8
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.6e-74 283.1 179 81.0
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 197 74.6
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 174 81.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.6e-74 283.1 207 72.5
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.7e-74 282.3 192 77.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.7e-74 282.3 187 76.5
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 3.5e-74 282.0 181 80.1
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 184 79.9
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.0e-73 280.4 197 74.1
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.8e-73 279.6 193 78.2
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.9e-73 278.5 190 77.4
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 5.1e-73 278.1 215 69.8
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.3e-71 273.5 185 77.8
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.3e-71 273.5 224 67.0
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.7e-71 271.9 230 66.1
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.7e-68 263.1 154 88.3
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.4e-67 260.0 249 59.4
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.3e-67 257.3 184 75.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.0e-65 253.8 159 81.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 3.9e-65 251.9 165 80.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-64 249.2 184 73.9
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.5e-64 249.2 174 73.0
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 2.5e-64 249.2 187 73.3
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 8.2e-63 244.2 187 68.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.7e-60 236.5 143 83.9
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 6.5e-60 234.6 134 88.8
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 8.5e-60 234.2 180 66.7
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 7.2e-59 231.1 135 88.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 4.6e-58 228.4 137 82.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.8e-55 218.4 130 83.8
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 6.3e-55 218.0 184 60.3
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 8.2e-55 217.6 136 81.6
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.4e-54 216.1 185 62.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.0e-52 210.7 140 78.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.2e-51 204.5 132 78.8
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.1e-50 203.0 204 59.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.0e-49 199.1 130 81.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.1e-49 198.4 132 78.0
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 3.1e-46 189.1 128 74.2
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 9.1e-46 187.6 110 85.5
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 8.8e-41 171.0 113 79.6
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.4e-40 168.7 109 78.9
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-39 166.0 102 79.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.0e-37 159.8 105 77.1
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.2e-35 152.1 100 81.0
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 7.2e-35 151.4 179 45.3
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.2e-34 150.6 92 85.9
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-34 149.4 93 79.6
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.2e-32 144.1 90 84.4
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 5.7e-32 141.7 102 74.5
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.7e-31 139.0 162 44.4
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 6.3e-31 138.3 169 42.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-30 137.5 82 84.1
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.0e-29 133.3 179 38.5
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 8.5e-28 127.9 75 86.7
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-27 127.5 94 70.2
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.2e-26 124.0 104 65.4
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 6.1e-26 121.7 101 68.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 8.0e-26 121.3 88 64.8
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.2e-18 97.4 63 76.2
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.9e-15 85.5 53 75.5
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.5e-13 79.3 49 77.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.0e-12 77.8 111 45.9
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.9e-12 76.3 111 45.0
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.9e-12 76.3 111 45.0
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 8.6e-12 74.7 66 68.2
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-11 74.3 111 44.1
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.5e-11 73.9 111 44.1
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.5e-08 63.9 114 40.4
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.9e-06 57.0 36 77.8
Nn4g25553 Nelumbo nucifera HOM05D004325 ORTHO05D049290 9.2e-06 54.7 38 68.4


User provided reference genes

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