Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 2.1e-258 895.2 448 100.0
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 6.9e-222 773.9 448 89.3
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.2e-154 550.4 435 68.3
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 2.0e-152 543.1 436 67.9
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 4.1e-150 535.4 449 64.6
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 1.1e-145 520.8 448 64.1
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 2.6e-144 516.2 463 61.6
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 2.1e-141 506.5 446 63.9
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 1.0e-140 504.2 434 65.0
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 1.7e-140 503.4 438 65.3
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 1.9e-118 430.3 437 55.8
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 8.2e-114 414.8 448 52.2
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 1.1e-113 414.5 438 53.2
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 1.4e-113 414.1 431 53.8
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 1.2e-112 411.0 441 53.7
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 4.9e-111 405.6 434 53.9
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 6.5e-111 405.2 433 53.6
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 3.5e-109 399.4 429 54.1
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 2.3e-108 396.7 432 51.6
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 8.7e-108 394.8 431 52.2
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 8.7e-108 394.8 430 52.8
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.3e-106 391.0 437 51.5
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 1.3e-106 391.0 445 50.3
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 2.2e-106 390.2 431 51.7
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 8.2e-106 388.3 433 51.7
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 1.5e-104 384.0 545 45.0
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 5.9e-104 382.1 436 50.5
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 1.3e-103 380.9 432 50.9
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 1.3e-103 380.9 435 50.1
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 1.3e-103 380.9 446 50.4
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 3.8e-103 379.4 441 49.4
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 3.8e-103 379.4 438 50.9
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 1.4e-102 377.5 431 50.8
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 1.4e-102 377.5 429 51.5
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 5.5e-102 375.6 428 51.6
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 9.4e-102 374.8 431 50.8
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 1.5e-99 367.5 434 47.9
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 3.3e-99 366.3 434 49.3
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 1.3e-98 364.4 431 49.7
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 2.8e-98 363.2 433 49.4
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 3.7e-98 362.8 430 50.2
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 2.4e-97 360.1 449 47.7
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 4.1e-97 359.4 339 61.4
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 6.9e-97 358.6 429 49.2
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 6.9e-97 358.6 438 47.9
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 9.1e-97 358.2 450 48.2
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 2.0e-96 357.1 438 49.8
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 2.6e-96 356.7 431 48.0
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 1.3e-95 354.4 433 47.3
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 2.9e-95 353.2 433 48.5
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 6.5e-95 352.1 420 48.1
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 1.4e-94 350.9 443 46.0
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 9.4e-94 348.2 334 59.6
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 1.6e-93 347.4 432 47.7
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 2.1e-93 347.1 435 47.6
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 3.6e-93 346.3 431 47.6
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 4.7e-93 345.9 437 47.6
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 4.7e-93 345.9 437 47.1
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 1.4e-92 344.4 433 46.9
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 1.8e-92 344.0 434 47.2
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 1.1e-91 341.3 431 47.3
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 1.1e-91 341.3 443 47.6
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.0e-91 340.5 502 43.6
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 5.7e-91 339.0 434 46.8
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 1.3e-90 337.8 432 46.3
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 2.2e-90 337.0 436 46.8
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 2.2e-90 337.0 433 47.1
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 2.2e-90 337.0 430 47.0
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 2.8e-90 336.7 435 46.9
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 4.8e-90 335.9 430 46.7
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 4.8e-90 335.9 441 46.7
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 1.8e-89 334.0 440 46.1
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 1.8e-89 334.0 429 46.2
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 2.4e-89 333.6 429 45.7
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 7.0e-89 332.0 430 45.6
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 2.2e-87 327.0 440 45.0
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.9e-87 326.6 435 46.2
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 1.1e-86 324.7 424 46.2
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 1.5e-86 324.3 428 47.2
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 1.5e-86 324.3 428 47.2
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.1e-85 320.5 413 48.2
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 2.1e-85 320.5 372 49.2
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 1.4e-84 317.8 428 46.7
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 5.2e-84 315.8 431 44.1
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 5.2e-84 315.8 370 51.6
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 4.8e-82 309.3 431 45.0
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.0e-79 301.6 386 47.2
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 6.5e-79 298.9 437 43.7
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 3.0e-76 290.0 373 46.9
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.2e-75 288.1 445 42.2
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.3e-74 284.6 421 43.7
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 2.8e-74 283.5 369 46.6
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 3.7e-74 283.1 352 48.9
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 4.1e-73 279.6 442 40.0
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 1.2e-72 278.1 438 43.2
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 4.5e-72 276.2 370 47.3
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 1.8e-68 264.2 378 43.4
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 2.7e-64 250.4 404 40.8
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 1.7e-58 231.1 340 42.9
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 4.9e-58 229.6 340 43.2
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-55 221.5 394 39.1
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 1.9e-54 217.6 383 40.5
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 3.3e-54 216.9 269 48.7
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 3.6e-53 213.4 284 46.1
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 8.0e-53 212.2 269 47.2
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.0e-48 197.6 306 43.1
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 7.8e-48 195.7 340 40.0
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.3e-47 194.9 275 42.5
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 3.1e-44 183.7 271 42.4
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 1.3e-39 168.3 420 31.7
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 1.7e-39 167.9 464 30.8
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 1.2e-37 161.8 116 69.8
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 1.4e-36 158.3 261 39.8
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 2.0e-35 154.5 428 31.1
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 7.6e-35 152.5 87 83.9
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.9e-34 150.6 87 81.6
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 3.7e-34 150.2 96 76.0
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 6.4e-34 149.4 191 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 5.4e-33 146.4 509 28.5
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.2e-32 145.2 87 79.3
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.0e-31 142.1 91 71.4
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 2.2e-26 124.4 165 46.7
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 7.8e-24 115.9 181 44.2
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 1.5e-22 111.7 409 27.1
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 5.6e-22 109.8 167 38.9
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.4e-20 104.4 56 83.9
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 4.0e-20 103.6 206 37.9
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 9.0e-20 102.4 211 37.4
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.2e-19 102.1 168 36.3
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 1.5e-19 101.7 107 52.3
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 1.4e-17 95.1 182 36.8
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.6e-15 86.3 164 40.9
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 2.8e-13 80.9 155 35.5
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.8e-12 78.2 225 30.7
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 3.4e-11 73.9 115 40.0
Haze_14787 Corylus avellana HOM05D005563 ORTHO05D006667 4.5e-11 73.6 272 27.9
Actinidia28221 Actinidia chinensis HOM05D005563 ORTHO05D006667 7.9e-08 62.8 87 43.7


User provided reference genes

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