Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NAPQ43 Arachis hypogaea HOM05D002242 ORTHO05D002275 6.6e-87 323.9 156 100.0
arahy.Tifrunner.gnm1.ann1.S82JHH Arachis hypogaea HOM05D002242 ORTHO05D002275 1.1e-86 323.2 156 99.4
Glyma.19G257000 Glycine max HOM05D002242 ORTHO05D002275 1.1e-30 137.1 173 49.7
VMungo0540G1854 Vigna mungo HOM05D002242 ORTHO05D002275 3.8e-26 122.1 187 41.2
Phvul.006G114400 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 3.0e-23 112.5 190 40.0
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 1.7e-21 106.7 182 42.9
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 3.7e-21 105.5 242 36.4
Lalb_Chr18g0044551 Lupinus albus HOM05D002242 ORTHO05D002275 6.3e-21 104.8 189 37.0
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 1.1e-20 104.0 224 33.5
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 2.4e-20 102.8 161 43.5
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 1.5e-19 100.1 191 39.3
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.9e-18 95.9 221 32.6
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 8.5e-18 94.4 220 35.0
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 1.9e-17 93.2 211 31.8
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 4.2e-17 92.0 223 31.8
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 4.2e-17 92.0 197 36.0
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 7.2e-17 91.3 224 31.7
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 7.2e-17 91.3 224 31.7
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 9.4e-17 90.9 223 31.8
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 9.4e-17 90.9 196 36.2
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 2.1e-16 89.7 232 33.2
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 3.6e-16 89.0 228 28.9
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 4.7e-16 88.6 219 28.8
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 6.1e-16 88.2 216 33.8
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 1.0e-15 87.4 218 32.6
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.3e-15 86.3 229 31.0
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 2.3e-15 86.3 209 31.6
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.0e-15 85.9 225 33.8
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.9e-15 85.5 229 31.0
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 5.2e-15 85.1 221 32.1
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 5.2e-15 85.1 225 29.3
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 8.8e-15 84.3 226 31.4
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 1.1e-14 84.0 225 30.7
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.5e-14 83.6 225 32.4
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 1.5e-14 83.6 215 34.0
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.0e-14 83.2 224 33.5
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 2.0e-14 83.2 204 30.4
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 2.6e-14 82.8 232 31.5
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 3.3e-14 82.4 207 33.8
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 5.7e-14 81.6 203 30.0
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.8e-13 79.3 232 30.2
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 2.8e-13 79.3 211 29.9
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 3.7e-13 79.0 233 29.2
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 1.1e-12 77.4 128 43.0
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 1.4e-12 77.0 63 60.3
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 4.1e-12 75.5 199 33.2
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 5.3e-12 75.1 224 29.9
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 5.3e-12 75.1 223 29.6
TPR.G4734 Trifolium pratense HOM05D002242 ORTHO05D002275 7.0e-12 74.7 81 53.1
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 7.0e-12 74.7 212 30.2
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.6e-11 73.6 67 56.7
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 2.6e-11 72.8 216 29.6
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 4.5e-11 72.0 92 48.9
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 4.5e-11 72.0 201 30.3
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 4.5e-11 72.0 214 29.0
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 5.9e-11 71.6 213 32.4
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 5.9e-11 71.6 203 32.5
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 5.9e-11 71.6 77 53.2
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 7.7e-11 71.2 211 30.8
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 1.0e-10 70.9 119 41.2
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 1.0e-10 70.9 199 31.2
SalBow5G1307 Salvia bowleyana HOM05D002242 ORTHO05D002275 1.0e-10 70.9 198 31.3
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.3e-10 70.5 71 57.7
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 1.3e-10 70.5 224 29.0
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 1.7e-10 70.1 83 50.6
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 1.7e-10 70.1 75 57.3
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 2.2e-10 69.7 213 31.5
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 2.2e-10 69.7 210 32.4
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 2.2e-10 69.7 217 27.6
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 2.9e-10 69.3 94 44.7
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 3.8e-10 68.9 231 28.6
Medtr8g027435 Medicago truncatula HOM05D002242 ORTHO05D002275 5.0e-10 68.6 85 48.2
TWI39G0876 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 5.0e-10 68.6 201 28.9
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 5.0e-10 68.6 85 48.2
CsaV3_6G008510 Cucumis sativus L. HOM05D002242 ORTHO05D002275 6.5e-10 68.2 178 30.9
Sopen10g005160 Solanum pennellii HOM05D002242 ORTHO05D002275 8.5e-10 67.8 169 32.0
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 1.1e-09 67.4 116 43.1
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 1.1e-09 67.4 209 32.1
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 1.5e-09 67.0 115 38.3
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.5e-09 67.0 223 29.6
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 1.9e-09 66.6 174 29.9
HanXRQChr16g0524311 Helianthus annuus HOM05D002242 ORTHO05D002275 1.9e-09 66.6 211 27.5
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.9e-09 66.6 64 60.9
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 1.9e-09 66.6 243 27.6
Aa31LG1G27920 Aethionema arabicum HOM05D010353 ORTHO05D011141 2.5e-09 66.2 139 35.3
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 2.5e-09 66.2 212 30.2
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.2e-09 65.9 87 47.1
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.2e-09 65.9 102 43.1
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 3.2e-09 65.9 196 30.1
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 5.5e-09 65.1 217 27.6
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 5.5e-09 65.1 64 54.7
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 7.2e-09 64.7 92 45.7
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 7.2e-09 64.7 57 57.9
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 7.2e-09 64.7 207 30.0
Solyc10g009380.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 7.2e-09 64.7 197 30.5
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 9.4e-09 64.3 194 29.9
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 9.4e-09 64.3 63 54.0
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 1.2e-08 63.9 59 54.2
BraA04t18902Z Brassica rapa HOM05D010353 ORTHO05D011141 1.2e-08 63.9 140 35.7
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.2e-08 63.9 213 26.8
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 1.6e-08 63.5 204 28.4
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 1.6e-08 63.5 114 39.5
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 1.6e-08 63.5 225 27.1
C04p72210 Brassica napus HOM05D010353 ORTHO05D011141 2.1e-08 63.2 140 35.0
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 2.1e-08 63.2 199 30.7
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.1e-08 63.2 199 30.7
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 2.7e-08 62.8 83 49.4
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 2.7e-08 62.8 186 29.0
BolC4t28708H Brassica oleracea HOM05D010353 ORTHO05D011141 3.6e-08 62.4 136 35.3
MD01G1217700 Malus domestica HOM05D002242 ORTHO05D002275 3.6e-08 62.4 206 29.1
PGR042G3115 Punica granatum HOM05D002242 ORTHO05D002275 3.6e-08 62.4 68 51.5
Lsat_1_v5_gn_6_85600 Lactuca sativa HOM05D002242 ORTHO05D002275 4.7e-08 62.0 66 53.0
BcaC02g12670 Brassica carinata HOM05D010353 ORTHO05D011141 8.0e-08 61.2 152 32.2
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.0e-08 61.2 212 27.4
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.0e-08 61.2 215 28.4
HanXRQChr17g0563391 Helianthus annuus HOM05D002242 ORTHO05D002275 1.0e-07 60.8 210 29.0
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.0e-07 60.8 71 50.7
ClCG06G002630 Citrullus lanatus HOM05D002242 ORTHO05D002275 1.4e-07 60.5 191 30.4
Thhalv10001658m.g Eutrema salsugineum HOM05D010353 ORTHO05D011141 1.4e-07 60.5 143 35.0
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.4e-07 60.5 206 30.6
CARHR141870 Cardamine hirsuta HOM05D010353 ORTHO05D011141 1.8e-07 60.1 136 36.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 2.3e-07 59.7 57 56.1
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.0e-07 59.3 200 29.5
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.0e-07 59.3 206 30.6
MD07G1286900 Malus domestica HOM05D002242 ORTHO05D002275 3.0e-07 59.3 202 30.2
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 3.0e-07 59.3 204 29.9
Sp4g28580 Schrenkiella parvula HOM05D010353 ORTHO05D011141 3.0e-07 59.3 143 33.6
ClCG05G000740 Citrullus lanatus HOM05D002242 ORTHO05D002275 4.0e-07 58.9 80 43.8
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 4.0e-07 58.9 215 28.4
BolC4t21792H Brassica oleracea HOM05D010353 ORTHO05D011141 5.2e-07 58.5 142 32.4
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 5.2e-07 58.5 123 37.4
Rhsim07G0003200 Rhododendron simsii HOM05D002242 ORTHO05D002275 5.2e-07 58.5 57 54.4
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 5.2e-07 58.5 194 26.8
Sed0027126 Sechium edule HOM05D002242 ORTHO05D002275 5.2e-07 58.5 167 30.5
ECA234G4607 Erigeron canadensis HOM05D002242 ORTHO05D002275 6.7e-07 58.2 34 76.5
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.7e-07 58.2 198 28.8
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 6.7e-07 58.2 199 26.6
Sed0004473 Sechium edule HOM05D002242 ORTHO05D002275 6.7e-07 58.2 76 44.7
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 8.8e-07 57.8 193 30.1
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea HOM05D002242 ORTHO05D002275 8.8e-07 57.8 202 27.7
BcaC02g12680 Brassica carinata HOM05D010353 ORTHO05D011141 8.8e-07 57.8 142 31.7
C04p01390 Brassica napus HOM05D010353 ORTHO05D011141 8.8e-07 57.8 142 31.7
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.2e-06 57.4 71 50.7
Peaxi162Scf00716g00032 Petunia axillaris HOM05D000078 ORTHO05D000025 1.2e-06 57.4 85 42.4
VMungo0647G2336 Vigna mungo HOM05D002242 ORTHO05D002275 1.2e-06 57.4 164 29.9
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 1.5e-06 57.0 83 45.8
arahy.Tifrunner.gnm1.ann1.73LR1S Arachis hypogaea HOM05D002242 ORTHO05D002275 2.0e-06 56.6 202 28.7
A05p01240 Brassica napus HOM05D010353 ORTHO05D011141 2.0e-06 56.6 142 31.7
BraA05t19125Z Brassica rapa HOM05D010353 ORTHO05D011141 2.0e-06 56.6 142 31.7
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 2.0e-06 56.6 168 26.8
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 2.0e-06 56.6 186 30.1
Sed0026965 Sechium edule HOM05D002242 ORTHO05D002275 2.0e-06 56.6 82 42.7
MSTRG.17354 Avicennia marina HOM05D002242 ORTHO05D002275 2.6e-06 56.2 78 44.9
Eucgr.E00045 Eucalyptus grandis HOM05D002242 ORTHO05D002275 2.6e-06 56.2 75 45.3
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.6e-06 56.2 198 28.8
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.6e-06 56.2 80 43.8
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.6e-06 56.2 80 43.8
CARHR266040 Cardamine hirsuta HOM05D002242 ORTHO05D002275 3.3e-06 55.8 215 26.5
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 3.3e-06 55.8 87 42.5
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 3.3e-06 55.8 198 30.3
SGA_v2.0_scaffold22G09962 Striga asiatica HOM05D002242 ORTHO05D002275 3.3e-06 55.8 70 47.1
AL4G45960 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 4.4e-06 55.5 137 32.8
PGSC0003DMG400018887 Solanum tuberosum HOM05D002242 ORTHO05D002275 4.4e-06 55.5 211 29.9
BcaC02g07038 Brassica carinata HOM05D010353 ORTHO05D011141 5.7e-06 55.1 142 31.7
SGA_v2.0_scaffold44G16810 Striga asiatica HOM05D002242 ORTHO05D002275 5.7e-06 55.1 84 40.5
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 7.5e-06 54.7 204 26.5
Phvul.001G075100 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 7.5e-06 54.7 182 30.2
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 7.5e-06 54.7 70 51.4
Thecc.03G200400 Theobroma cacao HOM05D002242 ORTHO05D002275 7.5e-06 54.7 91 39.6
CiPaw.06G045500 Carya illinoinensis HOM05D002242 ORTHO05D002275 9.7e-06 54.3 84 41.7
Duzib205G1627 Durio zibethinus HOM05D002242 ORTHO05D002275 9.7e-06 54.3 65 47.7


User provided reference genes

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