Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-107 392.5 198 100.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.6e-59 230.7 182 70.3
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 3.0e-52 209.1 183 66.1
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-42 177.2 161 64.6
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-41 173.7 149 67.1
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.0e-40 169.9 170 62.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.2e-34 149.8 143 60.8
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.3e-34 148.3 82 90.2
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 8.2e-34 147.9 144 60.4
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.4e-33 147.1 150 59.3
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.4e-33 147.1 145 61.4
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.4e-33 146.4 142 61.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 7.0e-33 144.8 145 60.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 7.0e-33 144.8 144 59.7
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.2e-32 144.1 142 60.6
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.0e-32 143.3 150 57.3
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.0e-32 143.3 143 60.1
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 2.6e-32 142.9 150 54.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.0e-31 141.0 145 59.3
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.2e-31 139.8 143 59.4
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 5.0e-31 138.7 147 52.4
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 5.0e-31 138.7 146 53.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 6.5e-31 138.3 143 55.2
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.1e-30 137.5 153 50.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.5e-30 137.1 144 54.9
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.5e-30 136.3 155 49.0
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.2e-30 136.0 155 50.3
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.2e-30 135.6 141 56.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.6e-29 133.7 150 52.7
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.7e-29 132.9 142 53.5
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.6e-29 132.5 144 50.0
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.7e-29 132.1 141 54.6
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 8.0e-29 131.3 155 49.7
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 8.0e-29 131.3 142 57.0
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.0e-28 131.0 158 49.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.4e-28 130.6 138 55.1
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.4e-28 130.6 138 55.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.4e-28 130.6 138 54.3
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.8e-28 130.2 142 52.8
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.8e-28 130.2 146 52.7
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.8e-28 130.2 142 51.4
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.8e-28 130.2 138 55.1
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.8e-28 130.2 155 49.7
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.8e-28 130.2 142 53.5
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 3.0e-28 129.4 144 54.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 4.0e-28 129.0 138 54.3
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 5.2e-28 128.6 152 46.7
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 5.2e-28 128.6 141 51.8
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.2e-28 128.6 138 52.9
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.2e-28 128.6 138 52.9
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.2e-28 128.6 138 52.9
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.2e-28 128.6 141 52.5
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 5.2e-28 128.6 142 52.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 6.7e-28 128.3 142 51.4
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-27 127.5 165 47.3
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.6e-27 126.3 137 54.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.6e-27 126.3 151 50.3
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.6e-27 126.3 141 52.5
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.3e-27 125.9 152 50.7
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.3e-27 125.9 146 51.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 4.4e-27 125.6 143 51.7
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.4e-27 125.6 137 54.0
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 7.5e-27 124.8 138 49.3
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 9.7e-27 124.4 151 50.3
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 9.7e-27 124.4 141 51.1
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.3e-26 124.0 137 52.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.7e-26 123.6 146 47.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.7e-26 123.6 145 49.7
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.7e-26 123.6 145 48.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.2e-26 123.2 150 49.3
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.2e-26 123.2 146 48.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.2e-26 123.2 136 52.2
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.8e-26 122.9 137 54.0
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.8e-26 122.9 143 50.3
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.7e-26 122.5 139 49.6
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 4.8e-26 122.1 144 50.7
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 6.3e-26 121.7 135 52.6
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 6.3e-26 121.7 138 52.2
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 8.2e-26 121.3 146 48.6
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.1e-25 120.9 143 51.0
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.1e-25 120.9 148 48.6
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.1e-25 120.9 142 50.0
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-25 120.9 142 49.3
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-25 120.6 142 48.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.4e-25 120.6 137 49.6
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.4e-25 120.6 142 48.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.8e-25 120.2 141 51.1
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.8e-25 120.2 145 46.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.4e-25 119.8 148 48.6
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 5.3e-25 118.6 137 48.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.3e-25 118.6 145 47.6
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 5.3e-25 118.6 156 47.4
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 5.3e-25 118.6 149 47.7
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 5.3e-25 118.6 142 48.6
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-24 117.5 138 48.6
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.2e-24 117.5 145 47.6
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.2e-24 117.5 140 52.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.2e-24 117.5 142 47.9
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.6e-24 117.1 144 47.9
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.6e-24 117.1 145 47.6
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.5e-24 115.9 145 49.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.5e-24 115.9 142 47.2
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 7.7e-24 114.8 142 47.9
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.7e-24 114.8 178 38.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 7.7e-24 114.8 139 48.2
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.0e-23 114.4 142 47.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 2.9e-23 112.8 148 46.6
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.9e-23 112.8 168 43.5
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 3.8e-23 112.5 142 48.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.0e-23 112.1 170 42.9
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 6.5e-23 111.7 173 42.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.1e-22 110.9 148 46.6
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.5e-22 110.5 154 46.1
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-22 110.5 150 45.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.9e-22 110.2 142 47.2
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.9e-22 110.2 164 41.5
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.5e-22 109.8 139 46.8
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.2e-22 109.0 134 47.0
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 7.2e-22 108.2 139 48.2
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 9.4e-22 107.8 168 41.7
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.1e-21 106.7 134 47.0
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.4e-20 104.0 149 43.6
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.2e-19 100.9 156 44.2
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.5e-19 100.5 159 37.7
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.7e-19 98.6 134 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.8e-18 96.3 138 42.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.1e-17 94.4 135 48.1
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.1e-17 92.4 139 41.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-16 90.9 141 37.6
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.5e-16 89.0 130 42.3
arahy.Tifrunner.gnm1.ann1.IKUR0B Arachis hypogaea HOM05D003898 ORTHO05D086768 1.0e-15 87.8 48 93.8
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 5.0e-15 85.5 98 51.0
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 5.0e-15 85.5 217 32.3
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.7e-13 79.0 152 41.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 6.1e-13 78.6 118 40.7
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-12 76.6 63 65.1
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-11 73.2 42 88.1
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.7e-11 72.0 56 60.7
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-10 70.5 72 48.6
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 3.7e-10 69.3 192 31.2
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.7e-10 69.3 72 50.0
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.9e-10 68.9 52 63.5
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 4.9e-10 68.9 52 63.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 6.3e-10 68.6 54 55.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-09 67.8 77 45.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.4e-09 67.4 65 53.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.0e-09 65.1 166 31.3
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.2e-08 64.3 72 47.2
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.7e-08 63.2 133 33.1
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.5e-08 62.8 45 60.0
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.9e-07 59.7 72 38.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.5e-06 56.6 150 30.7
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 5.6e-06 55.5 40 70.0


User provided reference genes

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