Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 4.1e-139 498.0 248 100.0
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 3.6e-119 431.8 248 89.5
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 2.1e-87 326.2 249 70.7
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 2.8e-87 325.9 250 70.4
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 2.3e-86 322.8 249 69.5
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 1.2e-85 320.5 242 71.9
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 2.0e-85 319.7 242 70.7
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 7.5e-85 317.8 244 70.5
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 5.4e-83 311.6 243 69.1
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 1.0e-81 307.4 247 67.2
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 6.6e-81 304.7 246 66.3
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 1.5e-80 303.5 248 65.7
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.6e-79 300.1 240 67.1
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.4e-78 297.0 247 65.6
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 1.8e-78 296.6 246 65.9
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 1.8e-78 296.6 247 65.6
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 1.8e-78 296.6 246 65.0
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 1.5e-77 293.5 245 64.9
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 2.6e-77 292.7 247 64.8
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 3.4e-77 292.4 246 65.0
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 5.8e-77 291.6 246 63.8
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.7e-76 290.0 243 65.4
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 4.9e-76 288.5 242 65.7
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.4e-75 287.0 247 64.0
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.4e-75 287.0 243 64.6
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 1.9e-75 286.6 248 62.5
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 3.2e-75 285.8 248 63.3
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 9.2e-75 284.3 240 62.5
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.6e-74 283.5 246 64.2
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 2.1e-74 283.1 243 63.8
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 7.8e-74 281.2 246 63.8
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 1.0e-73 280.8 248 60.5
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 1.3e-73 280.4 246 63.4
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.7e-73 280.0 252 63.1
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 2.3e-73 279.6 248 61.3
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.0e-73 279.3 246 63.0
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 3.0e-73 279.3 248 63.3
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 3.9e-73 278.9 239 63.2
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 5.1e-73 278.5 241 63.9
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 5.1e-73 278.5 242 65.3
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 3.3e-72 275.8 243 61.7
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 5.6e-72 275.0 265 58.9
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 5.6e-72 275.0 246 63.0
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 7.3e-72 274.6 250 60.8
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 9.5e-72 274.2 244 62.7
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 2.1e-71 273.1 246 61.0
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 4.7e-71 271.9 247 62.3
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 4.7e-71 271.9 247 62.3
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 4.7e-71 271.9 229 64.2
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.1e-70 270.8 244 61.5
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 1.1e-70 270.8 246 61.8
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 1.1e-70 270.8 220 66.4
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 1.4e-70 270.4 247 61.9
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 1.4e-70 270.4 249 60.6
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 1.4e-70 270.4 246 61.0
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.8e-70 270.0 245 60.0
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 1.8e-70 270.0 251 60.6
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 2.3e-70 269.6 242 62.0
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 2.3e-70 269.6 240 60.8
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 2.3e-70 269.6 242 62.4
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 4.0e-70 268.9 244 59.4
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 5.2e-70 268.5 234 63.2
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 6.8e-70 268.1 242 61.2
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 6.8e-70 268.1 248 62.1
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.5e-69 266.9 242 60.7
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 2.6e-69 266.2 246 59.8
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 5.8e-69 265.0 241 61.8
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.8e-69 265.0 270 57.4
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 2.2e-68 263.1 240 62.1
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 2.2e-68 263.1 247 60.7
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 1.1e-67 260.8 240 57.9
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 2.4e-67 259.6 244 59.0
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 3.2e-67 259.2 267 56.6
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 4.1e-67 258.8 248 57.7
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 1.2e-66 257.3 240 61.2
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 1.6e-66 256.9 243 58.0
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 6.0e-66 255.0 248 54.8
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.0e-65 254.2 243 57.6
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 1.0e-65 254.2 248 57.7
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.1e-64 250.8 247 59.1
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 9.5e-64 247.7 231 60.6
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 3.6e-63 245.7 245 55.9
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 3.6e-63 245.7 233 58.4
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 8.1e-63 244.6 226 62.8
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 2.4e-62 243.0 243 55.6
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 6.8e-62 241.5 242 56.6
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 3.8e-60 235.7 221 58.8
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 4.9e-60 235.3 243 56.8
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 8.4e-60 234.6 242 54.1
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 5.1e-57 225.3 243 54.3
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 4.3e-56 222.2 249 51.8
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 1.6e-55 220.3 228 53.9
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 4.0e-54 215.7 284 47.5
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 3.4e-53 212.6 203 58.1
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 7.6e-53 211.5 228 51.8
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 8.4e-52 208.0 258 49.2
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 1.1e-51 207.6 120 82.5
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 1.9e-51 206.8 241 50.6
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.6e-50 203.8 244 50.0
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.8e-46 190.3 117 77.8
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 6.9e-46 188.3 120 75.0
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 9.0e-46 188.0 251 47.8
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 9.0e-46 188.0 117 75.2
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 8.4e-44 181.4 220 50.9
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 1.4e-43 180.6 118 74.6
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 2.5e-40 169.9 244 43.4
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 2.9e-36 156.4 117 61.5
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.7e-34 149.8 107 69.2
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 1.8e-33 147.1 83 81.9
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 2.3e-33 146.7 259 39.8
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 1.3e-31 141.0 109 59.6
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 1.5e-29 134.0 221 42.1
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 2.7e-26 123.2 84 69.0
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 2.8e-23 113.2 70 75.7
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 1.1e-22 111.3 180 43.9
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 3.8e-20 102.8 169 42.0
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 1.2e-18 97.8 51 90.2
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 2.5e-16 90.1 69 63.8
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 9.7e-16 88.2 67 65.7
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 2.8e-15 86.7 65 72.3
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 3.4e-13 79.7 294 28.6
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 4.5e-13 79.3 56 73.2
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.3e-12 77.8 53 69.8
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 7.2e-11 72.0 242 29.8
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.2e-10 71.2 57 64.9
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 7.9e-10 68.6 45 77.8


User provided reference genes

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