Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 8.0e-117 423.7 205 100.0
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 5.8e-91 337.8 170 97.6
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 1.6e-72 276.6 173 80.9
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 1.6e-72 276.6 164 84.1
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 1.1e-70 270.4 170 78.2
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 9.6e-70 267.3 172 79.1
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.3e-69 266.9 167 81.4
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 1.6e-69 266.5 173 77.5
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 8.1e-69 264.2 173 76.3
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 1.4e-68 263.5 172 77.3
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.4e-68 262.7 170 78.8
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 4.0e-68 261.9 166 81.3
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 3.4e-67 258.8 163 80.4
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 7.6e-67 257.7 162 79.0
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 6.5e-66 254.6 166 79.5
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 8.4e-66 254.2 172 75.6
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 1.1e-65 253.8 170 72.4
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 1.9e-65 253.1 170 75.3
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 2.5e-65 252.7 173 73.4
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 4.2e-65 251.9 173 73.4
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 5.5e-65 251.5 162 78.4
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 1.2e-64 250.4 171 74.3
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 2.1e-64 249.6 172 73.8
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 2.7e-64 249.2 172 73.3
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 3.5e-64 248.8 169 73.4
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 7.9e-64 247.7 185 70.8
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 7.9e-64 247.7 174 72.4
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 1.0e-63 247.3 135 87.4
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.8e-63 246.5 169 73.4
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 6.7e-63 244.6 173 73.4
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 6.7e-63 244.6 169 71.0
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 8.7e-63 244.2 169 69.8
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 8.7e-63 244.2 177 70.1
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 8.7e-63 244.2 173 72.8
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 1.1e-62 243.8 171 72.5
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 1.5e-62 243.4 173 71.1
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 1.5e-62 243.4 144 81.9
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 1.9e-62 243.0 134 86.6
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.5e-62 242.7 169 69.8
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 4.3e-62 241.9 170 73.5
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 4.3e-62 241.9 173 72.8
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 5.7e-62 241.5 134 85.8
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 7.4e-62 241.1 173 69.9
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 7.4e-62 241.1 169 69.2
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.4e-62 241.1 169 69.2
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.4e-62 241.1 169 69.2
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 7.4e-62 241.1 134 86.6
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 9.6e-62 240.7 170 70.6
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 1.6e-61 240.0 171 69.6
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 3.7e-61 238.8 163 74.8
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 6.3e-61 238.0 169 69.2
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 8.2e-61 237.7 134 85.8
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 8.2e-61 237.7 133 85.7
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 8.2e-61 237.7 146 80.8
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.4e-60 236.9 151 76.8
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 1.8e-60 236.5 133 84.2
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 3.1e-60 235.7 172 69.2
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 3.1e-60 235.7 134 82.8
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 5.3e-60 235.0 134 83.6
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 5.3e-60 235.0 183 67.2
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 5.3e-60 235.0 168 72.0
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 9.0e-60 234.2 170 71.2
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 1.2e-59 233.8 156 72.4
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 1.5e-59 233.4 138 80.4
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 1.5e-59 233.4 174 69.0
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 2.0e-59 233.0 165 69.7
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 2.6e-59 232.6 134 82.1
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 7.6e-59 231.1 170 70.6
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 1.0e-58 230.7 134 82.1
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 2.2e-58 229.6 134 82.1
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 2.2e-58 229.6 169 68.0
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 6.5e-58 228.0 135 79.3
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 1.1e-57 227.3 134 80.6
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 1.4e-57 226.9 176 64.8
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 4.2e-57 225.3 135 79.3
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 5.5e-57 224.9 169 67.5
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 7.2e-57 224.6 164 67.1
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 1.2e-56 223.8 130 81.5
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 1.2e-56 223.8 134 79.1
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 2.7e-56 222.6 134 80.6
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 3.9e-55 218.8 139 75.5
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 8.7e-55 217.6 171 64.3
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 8.7e-55 217.6 171 64.3
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 5.7e-54 214.9 141 76.6
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 1.3e-53 213.8 141 75.9
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 2.2e-53 213.0 186 65.6
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 8.2e-53 211.1 134 74.6
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 1.1e-52 210.7 154 69.5
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 1.8e-52 209.9 130 76.9
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 9.1e-52 207.6 139 69.8
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 2.0e-51 206.5 178 61.8
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 1.0e-47 194.1 137 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 1.8e-47 193.4 130 71.5
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 5.1e-47 191.8 134 68.7
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 4.4e-46 188.7 137 67.2
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 3.7e-45 185.7 136 70.6
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 1.1e-44 184.1 167 56.9
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 1.4e-44 183.7 135 70.4
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.2e-42 176.4 169 54.4
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 6.5e-42 174.9 132 68.9
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 3.0e-39 166.0 148 59.5
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 7.7e-35 151.4 104 74.0
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 4.7e-32 142.1 79 83.5
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 1.0e-31 141.0 79 84.8
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 1.8e-31 140.2 189 47.6
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 2.3e-31 139.8 79 84.8
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.1e-28 131.0 83 77.1
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 4.2e-25 119.0 162 44.4
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 4.1e-20 102.4 86 62.8
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 4.1e-20 102.4 95 57.9
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 1.7e-18 97.1 144 43.1
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 2.1e-16 90.1 57 75.4
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 1.2e-14 84.3 146 38.4
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 5.7e-14 82.0 42 90.5
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.8e-12 77.0 48 68.8
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 9.2e-12 74.7 43 79.1
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 2.7e-11 73.2 111 40.5
MBI11_g05318_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-07 60.8 31 90.3
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 4.4e-06 55.8 46 60.9
Peaxi162Scf00786g00028 Petunia axillaris HOM05D014441 ORTHO05D016353 5.7e-06 55.5 32 71.9


User provided reference genes

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