Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.0e-192 675.6 343 100.0
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.1e-190 667.9 343 98.8
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 1.5e-155 553.1 343 82.5
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 7.1e-150 534.3 343 80.8
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.6e-149 533.1 346 78.0
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.7e-149 532.3 346 79.5
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.1e-147 526.9 346 79.8
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 6.4e-143 511.1 348 75.9
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 7.3e-139 497.7 348 75.3
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 2.4e-137 492.7 331 74.6
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 5.8e-136 488.0 346 74.9
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 9.3e-134 480.7 335 76.7
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.3e-131 472.2 344 71.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.3e-131 472.2 344 72.4
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.1e-130 469.5 350 70.6
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 6.2e-130 468.0 344 73.5
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 8.1e-130 467.6 344 71.5
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.2e-126 455.7 344 69.8
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 3.2e-126 455.7 343 72.0
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 9.3e-126 454.1 347 69.7
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.6e-125 453.4 320 75.3
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.7e-125 452.6 346 70.5
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.0e-125 451.4 344 70.9
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.3e-124 449.5 346 70.2
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.9e-124 448.7 346 69.9
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.3e-123 445.7 347 70.3
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.6e-123 444.9 344 70.6
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 9.6e-123 444.1 344 68.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.3e-122 443.7 344 70.6
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.6e-122 443.4 345 69.6
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 3.7e-122 442.2 350 68.9
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 3.7e-122 442.2 346 70.2
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.8e-122 441.8 348 68.1
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.1e-121 440.7 277 80.5
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.0e-121 438.7 344 70.6
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 6.9e-121 438.0 344 68.9
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 9.0e-121 437.6 347 69.7
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 9.0e-121 437.6 344 70.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 9.0e-121 437.6 344 69.2
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.6e-120 436.0 344 69.8
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.3e-119 433.7 356 67.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.7e-119 433.3 344 68.9
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.9e-119 431.8 348 68.4
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.4e-119 431.4 339 69.0
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.6e-117 426.8 345 67.0
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.7e-117 426.0 344 67.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 1.8e-116 423.3 336 67.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.5e-115 420.2 346 66.5
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.5e-115 419.5 348 66.1
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 5.6e-115 418.3 344 67.2
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.3e-114 417.2 345 65.5
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.3e-114 417.2 344 66.3
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.6e-114 416.8 344 68.3
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.6e-114 416.8 344 65.7
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 3.7e-114 415.6 409 59.4
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 6.2e-114 414.8 345 65.5
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.2e-114 414.5 344 68.0
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 3.1e-113 412.5 345 65.5
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 4.0e-113 412.1 336 66.1
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.3e-113 411.8 344 67.7
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 6.9e-113 411.4 346 66.2
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.2e-112 410.6 345 67.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.6e-112 409.5 343 67.1
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 5.8e-112 408.3 345 64.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 7.6e-112 407.9 414 58.2
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.3e-111 407.1 345 67.0
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 4.9e-111 405.2 346 65.3
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 6.5e-111 404.8 343 66.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.4e-111 404.4 389 60.2
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.1e-110 404.1 344 64.2
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.1e-109 399.8 346 64.5
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.1e-107 394.0 346 64.2
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 2.2e-106 389.8 344 62.2
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 3.1e-105 386.0 345 62.3
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 4.1e-105 385.6 345 62.3
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 5.3e-105 385.2 350 62.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.0e-103 380.9 345 62.3
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 2.2e-103 379.8 295 69.8
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.8e-103 379.0 358 63.4
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 5.0e-103 378.6 344 63.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.4e-102 377.1 345 62.6
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 3.2e-102 375.9 344 60.8
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.2e-101 374.0 346 61.6
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.6e-101 373.6 398 56.8
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.6e-101 372.5 345 62.3
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.6e-101 372.5 347 64.6
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.6e-101 372.1 348 61.8
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 8.8e-100 367.9 343 60.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.5e-99 366.3 350 62.6
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 5.7e-99 365.2 347 59.4
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.3e-98 364.0 326 63.5
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.7e-98 363.6 346 60.4
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.4e-97 360.5 347 59.7
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.8e-97 360.1 348 60.3
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 6.9e-97 358.2 347 60.5
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.5e-96 357.1 343 60.3
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.0e-96 356.7 345 60.6
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 4.5e-96 355.5 349 59.6
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.7e-95 353.6 349 59.3
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.2e-95 353.2 345 60.3
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.9e-95 352.8 344 58.7
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.5e-95 351.7 345 58.6
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.1e-94 350.9 344 60.2
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.9e-94 350.1 351 59.0
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.2e-94 349.0 347 61.1
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.5e-94 348.6 326 63.8
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 9.4e-94 347.8 348 58.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 9.4e-94 347.8 344 57.6
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.1e-93 346.7 353 56.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.7e-93 346.3 344 58.1
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-92 343.2 343 59.8
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 2.3e-92 343.2 343 59.8
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.9e-92 342.4 344 59.0
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 5.1e-92 342.0 283 65.7
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 6.7e-92 341.7 345 60.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.1e-91 340.9 345 58.3
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-91 340.1 345 58.3
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 3.3e-91 339.3 346 58.1
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.3e-90 337.4 343 58.6
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.7e-90 337.0 343 58.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.7e-90 337.0 344 59.6
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.7e-90 337.0 343 58.6
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 2.2e-90 336.7 345 58.3
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 6.3e-90 335.1 345 59.7
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.6e-88 329.7 344 58.1
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 5.9e-88 328.6 343 57.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 5.9e-88 328.6 343 57.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.3e-87 327.4 343 57.1
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.2e-87 326.6 347 57.3
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.0e-87 325.5 358 55.6
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.4e-86 323.9 343 55.1
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 5.5e-86 322.0 344 54.4
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 7.2e-86 321.6 331 55.0
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.6e-85 320.5 348 52.9
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 8.0e-85 318.2 248 69.4
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 8.8e-84 314.7 282 65.2
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.0e-83 313.5 338 53.6
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.3e-83 312.8 263 66.9
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 3.3e-83 312.8 339 55.5
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 6.3e-82 308.5 342 53.8
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.9e-79 299.7 343 52.8
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.3e-66 257.7 343 50.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.8e-66 256.5 207 69.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 5.2e-60 235.7 348 45.1
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 7.5e-59 231.9 247 53.8
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.2e-49 199.9 349 39.8
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.6e-45 186.4 340 41.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.5e-38 163.7 243 43.2
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.1e-33 148.3 399 30.6
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 5.8e-27 125.9 154 50.6
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.4e-25 119.4 156 49.4
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 2.2e-18 97.4 90 58.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.5e-16 90.1 261 31.4
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.3e-14 83.2 142 39.4
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.9e-10 70.5 181 33.1
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 7.1e-09 65.9 243 25.9
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 9.3e-09 65.5 189 29.6
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 4.6e-08 63.2 145 34.5
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.1e-06 58.5 336 24.4
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.9e-06 57.8 265 23.0
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 9.6e-06 55.5 184 25.0


User provided reference genes

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