Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.6e-122 440.7 245 100.0
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-121 438.0 245 99.6
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 5.3e-91 338.2 275 71.6
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.1e-91 337.4 275 72.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 3.2e-88 328.9 274 71.2
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.2e-88 328.6 271 70.8
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-87 326.6 273 70.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.1e-87 326.2 274 69.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 2.7e-87 325.9 274 70.8
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-87 325.1 274 70.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.0e-86 323.9 274 69.3
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.0e-86 323.9 274 69.7
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.0e-86 323.9 274 70.1
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.8e-86 323.2 274 68.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.3e-86 322.8 274 69.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.3e-86 322.8 274 68.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.0e-86 322.4 274 68.6
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 5.1e-86 321.6 274 69.7
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 6.7e-86 321.2 274 70.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.1e-85 320.5 274 69.7
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.1e-85 320.5 274 69.7
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.6e-85 319.3 274 69.3
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 3.3e-85 318.9 273 68.5
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 5.7e-85 318.2 266 71.1
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 7.4e-85 317.8 274 69.0
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 7.4e-85 317.8 274 69.3
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 9.7e-85 317.4 274 69.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 9.7e-85 317.4 274 69.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.3e-84 317.0 274 68.2
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.3e-84 317.0 274 67.5
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.7e-84 316.6 274 67.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.7e-84 316.6 274 69.3
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.2e-84 316.2 274 67.5
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.2e-84 316.2 274 69.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.2e-84 316.2 274 68.2
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.2e-84 316.2 274 67.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 2.8e-84 315.8 273 69.6
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 3.7e-84 315.5 274 66.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 4.8e-84 315.1 274 67.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.8e-84 315.1 274 67.2
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 6.3e-84 314.7 274 67.2
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.3e-84 314.7 274 67.2
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 8.2e-84 314.3 274 67.5
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 8.2e-84 314.3 274 67.9
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.1e-83 313.9 274 66.1
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-83 313.9 274 67.2
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.1e-83 313.9 274 67.9
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.1e-83 313.9 274 66.8
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.4e-83 313.5 274 68.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.4e-83 313.5 274 67.5
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.8e-83 313.2 275 68.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.1e-83 312.4 274 67.5
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 3.1e-83 312.4 274 68.2
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 4.1e-83 312.0 274 68.2
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 4.1e-83 312.0 274 66.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.1e-83 312.0 280 67.5
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.1e-83 312.0 274 67.2
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 5.3e-83 311.6 274 66.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 9.1e-83 310.8 274 66.8
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.2e-82 310.5 274 66.1
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.5e-82 310.1 273 67.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.6e-82 309.3 274 66.1
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.6e-82 309.3 274 65.7
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.5e-82 308.5 274 65.7
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 4.5e-82 308.5 274 65.7
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 7.7e-82 307.8 274 67.2
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.0e-81 307.4 274 66.8
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.3e-81 307.0 274 66.1
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.7e-81 306.6 275 65.8
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.7e-81 306.6 274 66.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.2e-81 306.2 274 66.1
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.9e-81 305.8 261 70.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.8e-81 305.4 261 69.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.8e-81 305.4 261 69.3
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 6.5e-81 304.7 274 66.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 2.5e-80 302.8 274 66.1
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 9.4e-80 300.8 275 65.1
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 9.4e-80 300.8 275 65.1
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.2e-79 300.4 274 66.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.1e-79 299.7 298 62.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.7e-79 299.3 274 66.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 3.6e-79 298.9 274 65.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 6.1e-79 298.1 274 65.3
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-78 295.8 317 59.9
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 3.0e-78 295.8 270 66.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.9e-78 295.4 277 66.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.7e-77 291.6 274 64.6
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 7.4e-77 291.2 274 63.5
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.3e-76 290.4 275 64.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.2e-76 289.7 274 63.9
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 8.2e-76 287.7 274 59.9
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 7.0e-75 284.6 318 56.6
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.0e-74 283.1 255 67.8
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 4.5e-74 282.0 315 56.2
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.0e-73 280.8 272 64.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.2e-73 279.6 225 72.9
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.5e-73 278.1 275 61.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.5e-72 276.2 296 54.1
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.2e-72 275.8 318 51.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 3.2e-72 275.8 225 72.9
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.4e-72 274.2 309 56.0
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.6e-71 273.5 269 57.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-71 273.1 260 65.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.1e-71 273.1 254 64.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.8e-70 270.0 274 55.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.0e-70 269.2 357 47.6
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.5e-69 266.9 284 60.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.0e-69 266.5 278 60.1
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.4e-69 265.4 274 59.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.7e-69 264.2 238 70.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.7e-69 264.2 238 70.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-68 263.8 328 56.1
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 2.2e-65 253.1 274 53.6
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.1e-64 250.8 267 58.4
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.6e-63 246.9 278 55.8
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 8.0e-63 244.6 275 55.3
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.0e-62 244.2 169 82.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.4e-62 243.8 280 53.6
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 7.5e-61 238.0 222 66.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 7.5e-61 238.0 276 49.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 5.9e-58 228.4 222 64.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 3.7e-52 209.1 187 70.1
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 3.3e-48 196.1 135 74.1
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.2e-45 187.6 220 51.8
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 4.4e-45 185.7 129 73.6
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.7e-42 176.4 102 84.3
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 7.3e-40 168.3 273 41.0
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-39 166.0 278 43.9
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.9e-36 156.4 94 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.1e-35 154.5 90 85.6
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.0e-34 148.7 151 58.9
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 8.6e-33 144.8 168 63.7
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 9.5e-32 141.4 145 66.2
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.1e-31 140.2 81 86.4
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 3.4e-29 132.9 156 49.4
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.4e-28 128.6 154 52.6
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 6.6e-25 118.6 74 78.4
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.6e-24 115.5 71 80.3
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.6e-24 115.5 71 80.3
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-22 110.2 75 94.7
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.1e-22 109.8 129 51.2
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 9.9e-21 104.8 121 54.5
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-20 104.0 75 86.7
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.9e-19 100.5 66 72.7
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.4e-19 99.0 157 43.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 6.0e-18 95.5 154 39.0
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 5.1e-17 92.4 158 44.9
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 8.7e-17 91.7 50 90.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.1e-16 91.3 158 39.2
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-15 86.7 44 93.2
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 6.2e-15 85.5 147 40.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-14 84.7 157 35.7
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-13 81.3 159 36.5
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.9e-12 76.6 45 84.4
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 2.9e-12 76.6 43 83.7
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.4e-12 75.1 157 39.5
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 8.4e-12 75.1 264 31.4
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.4e-11 72.4 162 35.8
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.1e-07 60.5 136 39.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 8.1e-07 58.5 235 31.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 4.0e-06 56.2 37 73.0


User provided reference genes

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