Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N60BY5 Arachis hypogaea HOM05D007941 ORTHO05D010050 0.0e+00 1205.7 634 100.0
arahy.Tifrunner.gnm1.ann1.CCWF18 Arachis hypogaea HOM05D007941 ORTHO05D010050 0.0e+00 1129.4 634 92.3
Glyma.17G013700 Glycine max HOM05D007941 ORTHO05D010050 2.6e-206 722.6 687 61.7
Phvul.003G078500 Phaseolus vulgaris HOM05D007941 ORTHO05D010050 2.3e-199 699.5 704 59.1
VMungo1215G2837 Vigna mungo HOM05D007941 ORTHO05D010050 2.4e-196 689.5 691 60.1
Lj4g0020812 Lotus japonicus HOM05D007941 ORTHO05D010050 1.4e-191 673.7 686 58.7
Ca_21085_v3 Cicer arietinum L. HOM05D007941 ORTHO05D010050 3.0e-162 576.2 666 52.6
TPR.G37125 Trifolium pratense HOM05D007941 ORTHO05D010050 3.3e-161 572.8 785 48.0
Haze_06797 Corylus avellana HOM05D007941 ORTHO05D010050 9.6e-161 571.2 702 50.9
Cfa000224 Carpinus fangiana HOM05D007941 ORTHO05D010050 8.2e-160 568.2 699 50.5
Prupe.4G021200 Prunus persica HOM05D007941 ORTHO05D010050 4.2e-156 555.8 689 49.6
Thecc.06G220000 Theobroma cacao HOM05D007941 ORTHO05D010050 1.0e-154 551.2 705 49.2
RcHm_v2.0_Chr5g0003191 Rosa chinensis HOM05D007941 ORTHO05D010050 1.8e-154 550.4 688 49.3
QL05p073215 Quercus lobata HOM05D007941 ORTHO05D010050 2.3e-154 550.1 710 50.1
TWI38G0160 Tripterygium wilfordii HOM05D007941 ORTHO05D010050 1.5e-153 547.4 715 47.8
COL.COLO4_31770 Corchorus olitorius HOM05D007941 ORTHO05D010050 5.7e-153 545.4 677 49.6
Manes.16G007400 Manihot esculenta HOM05D007941 ORTHO05D010050 1.3e-152 544.3 694 48.6
MD05G1345700 Malus domestica HOM05D007941 ORTHO05D010050 2.8e-152 543.1 696 48.9
Gorai.011G014100 Gossypium raimondii HOM05D007941 ORTHO05D010050 9.0e-151 538.1 666 48.5
MD10G1321100 Malus domestica HOM05D007941 ORTHO05D010050 1.3e-149 534.3 694 48.0
FAN25G1443 Fragaria x ananassa HOM05D007941 ORTHO05D010050 3.8e-149 532.7 683 48.6
Ciclev10017854m.g Citrus clementina HOM05D007941 ORTHO05D010050 6.5e-149 531.9 680 48.8
Gohir.D10G012450 Gossypium hirsutum HOM05D007941 ORTHO05D010050 2.5e-148 530.0 666 47.7
Potri.004G015401 Populus trichocarpa HOM05D007941 ORTHO05D010050 5.5e-148 528.9 700 48.1
Atru.chr10.2217 Acer truncatum HOM05D007941 ORTHO05D010050 5.1e-146 522.3 704 47.2
Gohir.A10G012680 Gossypium hirsutum HOM05D007941 ORTHO05D010050 3.3e-145 519.6 666 47.7
Sabra04G0007600 Salix brachista HOM05D007941 ORTHO05D010050 1.4e-143 514.2 709 46.0
CANSAT56G1781 Cannabis sativa HOM05D007941 ORTHO05D010050 1.5e-142 510.8 693 47.5
FvH4_3g02100 Fragaria vesca HOM05D007941 ORTHO05D010050 7.7e-142 508.4 671 48.1
TAR627G0026 Trochodendron aralioides HOM05D007941 ORTHO05D010050 3.2e-140 503.1 719 46.5
CsaV3_1G010790 Cucumis sativus L. HOM05D007941 ORTHO05D010050 4.7e-139 499.2 678 46.5
CiPaw.09G091700 Carya illinoinensis HOM05D007941 ORTHO05D010050 1.0e-138 498.0 480 57.3
Nn1g07127 Nelumbo nucifera HOM05D007941 ORTHO05D010050 6.7e-138 495.4 729 44.6
Cc09_g01710 Coffea canephora HOM05D007941 ORTHO05D010050 8.2e-136 488.4 708 45.5
Sed0010816 Sechium edule HOM05D007941 ORTHO05D010050 1.0e-133 481.5 673 46.7
ClCG03G004750 Citrullus lanatus HOM05D007941 ORTHO05D010050 1.3e-133 481.1 680 45.9
Cpa.g.sc152.13 Carica papaya HOM05D007941 ORTHO05D010050 2.9e-133 479.9 703 46.2
PSO832G2769 Papaver somniferum HOM05D007941 ORTHO05D010050 5.7e-129 465.7 688 44.5
Lj1C1230T3 Lonicera japonica HOM05D007941 ORTHO05D010050 2.2e-128 463.8 532 50.9
Actinidia26916 Actinidia chinensis HOM05D007941 ORTHO05D010050 5.3e-127 459.1 695 45.6
MELO3C002458.2 Cucumis melo HOM05D007941 ORTHO05D010050 1.1e-124 451.4 690 44.1
PGR004G0641 Punica granatum HOM05D007941 ORTHO05D010050 3.7e-120 436.4 642 45.0
Nitab4.5_0012670g0020 Nicotiana tabacum HOM05D007941 ORTHO05D010050 8.5e-117 425.2 624 45.5
Solyc03g031660.1 Solanum lycopersicum HOM05D007941 ORTHO05D010050 3.6e-115 419.9 665 42.4
Dinv13890 Davidia involucrata HOM05D007941 ORTHO05D010050 3.0e-114 416.8 614 46.6
Medtr4g132080 Medicago truncatula HOM05D007941 ORTHO05D010050 1.3e-112 411.4 440 55.0
Sopen03g005520 Solanum pennellii HOM05D007941 ORTHO05D010050 2.2e-112 410.6 665 42.3
Nitab4.5_0007864g0050 Nicotiana tabacum HOM05D007941 ORTHO05D010050 2.3e-109 400.6 616 44.3
AUR62012706 Chenopodium quinoa HOM05D007941 ORTHO05D010050 2.5e-108 397.1 512 47.1
Nn1g03523 Nelumbo nucifera HOM05D007941 ORTHO05D010050 1.2e-107 394.8 370 56.5
CiPaw.09G091500 Carya illinoinensis HOM05D007941 ORTHO05D010050 2.6e-105 387.1 270 74.1
GSVIVG01012729001 Vitis vinifera HOM05D007941 ORTHO05D010050 2.9e-104 383.6 284 70.4
CDE05G3547 Ceratophyllum demersum HOM05D007941 ORTHO05D010050 3.5e-102 376.7 400 53.5
FAN21G2241 Fragaria x ananassa HOM05D007941 ORTHO05D010050 1.3e-101 374.8 345 58.3
Hma1.2p1_0749F.1_g212520 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 3.9e-101 373.2 207 85.5
Hma1.2p1_0749F.1_g212543 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 3.9e-101 373.2 207 85.5
Peaxi162Scf00502g00214 Petunia axillaris HOM05D007941 ORTHO05D010050 1.9e-100 370.9 676 40.7
Mapoly0124s0009 Marchantia polymorpha HOM05D007941 ORTHO05D010050 3.6e-99 366.7 446 48.7
EL10Ac8g20054 Beta vulgaris HOM05D007941 ORTHO05D010050 1.0e-93 348.6 587 41.7
Pp3c25_7620 Physcomitrium patens HOM05D007941 ORTHO05D010050 3.1e-90 337.0 610 39.3
Glyma.07G260250 Glycine max HOM05D007941 ORTHO05D010050 2.1e-70 271.2 362 47.5
MBI02_g07163_MAGBIO Magnolia biondii HOM05D007941 ORTHO05D010050 2.0e-49 201.4 288 46.2
SEGI_08485 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 7.9e-38 162.9 300 41.3
AUR62021948 Chenopodium quinoa HOM05D007941 ORTHO05D010050 2.2e-32 144.8 226 43.8
SEGI_17062 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 2.3e-29 134.8 70 84.3
Dinv20049 Davidia involucrata HOM05D007941 ORTHO05D010050 5.0e-24 117.1 198 38.4
SEGI_18097 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 3.2e-23 114.4 140 50.0
AUR62021949 Chenopodium quinoa HOM05D007941 ORTHO05D010050 4.2e-23 114.0 266 33.8
Medtr4g132090 Medicago truncatula HOM05D007941 ORTHO05D010050 2.3e-21 108.2 136 49.3
ATR0794G083 Amborella trichopoda HOM05D007941 ORTHO05D010050 3.9e-21 107.5 74 71.6
ATR0794G095 Amborella trichopoda HOM05D007941 ORTHO05D010050 1.1e-18 99.4 64 76.6
Dinv20048 Davidia involucrata HOM05D007941 ORTHO05D010050 4.2e-15 87.4 65 75.4
FAN21G0178 Fragaria x ananassa HOM05D007941 ORTHO05D010050 7.2e-15 86.7 72 68.1
Nn1g03524 Nelumbo nucifera HOM05D007941 ORTHO05D010050 1.5e-07 62.4 80 53.8


User provided reference genes

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