Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N56UGC Arachis hypogaea HOM05D002570 ORTHO05D002689 4.3e-52 207.6 97 100.0
arahy.Tifrunner.gnm1.ann1.CN16C1 Arachis hypogaea HOM05D002570 ORTHO05D002689 2.0e-49 198.7 96 95.8
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.7e-22 108.6 97 52.6
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 4.3e-20 101.3 101 51.5
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 7.4e-20 100.5 92 54.3
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 1.6e-19 99.4 105 48.6
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 1.1e-18 96.7 92 54.3
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 2.4e-18 95.5 93 52.7
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 1.5e-17 92.8 89 49.4
Psat1g078440 Pisum sativum HOM05D002570 ORTHO05D002689 3.8e-16 88.2 92 47.8
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 9.3e-15 83.6 89 43.8
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.2e-14 83.2 89 40.4
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.0e-13 80.1 87 47.1
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 2.3e-13 79.0 86 46.5
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 3.0e-13 78.6 81 46.9
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 4.3e-12 74.7 80 42.5
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 7.4e-12 73.9 83 42.2
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 7.4e-12 73.9 84 45.2
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 9.7e-12 73.6 82 37.8
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 4.8e-11 71.2 87 41.4
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 4.8e-11 71.2 80 40.0
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 4.8e-11 71.2 86 46.5
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 6.3e-11 70.9 77 45.5
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 8.2e-11 70.5 80 37.5
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 8.2e-11 70.5 80 41.2
Sc15g0005580 Simmondsia chinensis HOM05D002570 ORTHO05D002689 1.8e-10 69.3 83 41.0
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 2.4e-10 68.9 88 40.9
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 5.3e-10 67.8 82 40.2
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 1.2e-09 66.6 76 43.4
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.2e-09 66.6 77 44.2
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.5e-09 66.2 98 36.7
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 2.0e-09 65.9 93 39.8
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.0e-09 65.9 80 41.2
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.0e-09 65.9 98 36.7
Hund09510 Selenicereus undatus HOM05D002570 ORTHO05D002689 2.0e-09 65.9 85 38.8
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 2.6e-09 65.5 73 45.2
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 3.4e-09 65.1 88 39.8
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 4.5e-09 64.7 60 46.7
PGSC0003DMG400000865 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.5e-09 64.7 88 37.5
COL.COLO4_28527 Corchorus olitorius HOM05D002570 ORTHO05D002689 5.9e-09 64.3 71 47.9
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 5.9e-09 64.3 88 39.8
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 5.9e-09 64.3 56 50.0
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 5.9e-09 64.3 81 39.5
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 5.9e-09 64.3 74 40.5
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 5.9e-09 64.3 79 39.2
EL10Ac5g10534 Beta vulgaris HOM05D002570 ORTHO05D002689 1.0e-08 63.5 84 36.9
RcHm_v2.0_Chr6g0309331 Rosa chinensis HOM05D002570 ORTHO05D002689 1.3e-08 63.2 67 46.3
Cc10_g05610 Coffea canephora HOM05D002570 ORTHO05D002689 1.7e-08 62.8 82 35.4
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.7e-08 62.8 81 35.8
Aqoxy6G02718 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 2.2e-08 62.4 85 32.9
AUR62032321 Chenopodium quinoa HOM05D002570 ORTHO05D002689 2.2e-08 62.4 79 39.2
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 2.9e-08 62.0 91 40.7
Sed0024363 Sechium edule HOM05D002570 ORTHO05D002689 2.9e-08 62.0 83 38.6
Zm00001eb400620 Zea mays HOM05D002570 ORTHO05D002689 2.9e-08 62.0 64 43.8
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.8e-08 61.6 82 37.8
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.8e-08 61.6 82 37.8
vmacro22064 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 5.0e-08 61.2 78 35.9
Zm00001eb007320 Zea mays HOM05D002570 ORTHO05D002689 5.0e-08 61.2 52 50.0
AT5G43150 Arabidopsis thaliana HOM05D002570 ORTHO05D002689 6.5e-08 60.8 77 36.4
SalBow7G3896 Salvia bowleyana HOM05D002570 ORTHO05D002689 6.5e-08 60.8 81 33.3
THA.LOC104804738 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 6.5e-08 60.8 78 38.5
BcaB07g30593 Brassica carinata HOM05D002570 ORTHO05D002689 8.5e-08 60.5 82 37.8
Peaxi162Scf00081g01321 Petunia axillaris HOM05D002570 ORTHO05D002689 8.5e-08 60.5 83 37.3
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 8.5e-08 60.5 63 42.9
Zm00001eb400610 Zea mays HOM05D002570 ORTHO05D002689 8.5e-08 60.5 52 50.0
CARHR180760 Cardamine hirsuta HOM05D002570 ORTHO05D002689 1.1e-07 60.1 76 35.5
Gohir.D05G211800 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.1e-07 60.1 71 39.4
THA.LOC104825766 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 1.1e-07 60.1 88 38.6
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 1.9e-07 59.3 81 38.3
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.9e-07 59.3 80 36.2
Lalb_Chr02g0159831 Lupinus albus HOM05D002570 ORTHO05D002689 2.5e-07 58.9 66 47.0
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.5e-07 58.9 79 36.7
Sc15g0005750 Simmondsia chinensis HOM05D001633 ORTHO05D002880 2.5e-07 58.9 104 33.7
HPP92_026648 Vanilla planifolia HOM05D002570 ORTHO05D002689 2.5e-07 58.9 84 36.9
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 3.2e-07 58.5 82 34.1
MELO3C032377.2 Cucumis melo HOM05D002570 ORTHO05D002689 4.2e-07 58.2 87 39.1
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 4.2e-07 58.2 86 32.6
THA.LOC104812588 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 4.2e-07 58.2 81 35.8
Thhalv10003296m.g Eutrema salsugineum HOM05D002570 ORTHO05D002689 5.5e-07 57.8 81 32.1
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 5.5e-07 57.8 73 41.1
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 5.5e-07 57.8 73 39.7
PGSC0003DMG400021530 Solanum tuberosum HOM05D002570 ORTHO05D002689 5.5e-07 57.8 84 36.9
BcaC06g34677 Brassica carinata HOM05D002570 ORTHO05D002689 7.2e-07 57.4 77 36.4
BolC7t43091H Brassica oleracea HOM05D002570 ORTHO05D002689 7.2e-07 57.4 77 36.4
Prupe.1G424900 Prunus persica HOM05D002570 ORTHO05D002689 7.2e-07 57.4 55 40.0
C07p25720 Brassica napus HOM05D002570 ORTHO05D002689 9.3e-07 57.0 77 35.1
CDE07G0252 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 9.3e-07 57.0 68 38.2
Lsat_1_v5_gn_4_130881 Lactuca sativa HOM05D002570 ORTHO05D002689 9.3e-07 57.0 78 33.3
BcaC06g31719 Brassica carinata HOM05D002570 ORTHO05D002689 1.6e-06 56.2 77 35.1
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.6e-06 56.2 80 33.8
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.6e-06 56.2 79 35.4
A06p48010 Brassica napus HOM05D002570 ORTHO05D002689 2.1e-06 55.8 77 35.1
BraA06t27671Z Brassica rapa HOM05D002570 ORTHO05D002689 2.1e-06 55.8 77 35.1
HPP92_012494 Vanilla planifolia HOM05D002570 ORTHO05D002689 2.7e-06 55.5 76 32.9
Aa31LG9G13240 Aethionema arabicum HOM05D002570 ORTHO05D002689 3.6e-06 55.1 75 34.7
Carub.0008s0556 Capsella rubella HOM05D002570 ORTHO05D002689 3.6e-06 55.1 77 33.8
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 3.6e-06 55.1 78 34.6
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 3.6e-06 55.1 85 36.5
Sopen04g031620 Solanum pennellii HOM05D002570 ORTHO05D002689 3.6e-06 55.1 67 40.3
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 4.6e-06 54.7 83 34.9
Sp2g07930 Schrenkiella parvula HOM05D002570 ORTHO05D002689 4.6e-06 54.7 83 32.5
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 6.1e-06 54.3 83 34.9
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 6.1e-06 54.3 77 35.1
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 6.1e-06 54.3 83 34.9
Hund02836 Selenicereus undatus HOM05D002570 ORTHO05D002689 6.1e-06 54.3 54 40.7
Solyc04g078030.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 6.1e-06 54.3 67 40.3
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 7.9e-06 53.9 75 36.0
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.9e-06 53.9 83 34.9
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.9e-06 53.9 83 34.9


User provided reference genes

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