Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 3.7e-76 288.1 144 100.0
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 1.4e-19 100.1 62 82.3
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 7.1e-19 97.8 62 80.6
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 4.8e-15 85.1 62 71.0
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 6.2e-15 84.7 62 71.0
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 6.2e-15 84.7 70 64.3
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 4.0e-14 82.0 69 58.0
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 6.9e-14 81.3 70 62.9
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 1.2e-13 80.5 62 66.1
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 5.8e-13 78.2 62 58.1
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 7.6e-13 77.8 70 60.0
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 3.8e-12 75.5 62 58.1
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 3.8e-12 75.5 62 58.1
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 6.4e-12 74.7 64 54.7
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 8.4e-12 74.3 62 56.5
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 8.4e-12 74.3 62 56.5
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.4e-12 74.3 62 56.5
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.4e-12 74.3 62 56.5
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.4e-12 74.3 62 56.5
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.4e-11 73.6 62 56.5
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 1.9e-11 73.2 70 54.3
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.9e-11 73.2 75 50.7
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 2.4e-11 72.8 61 60.7
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 2.4e-11 72.8 65 53.8
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 4.2e-11 72.0 61 59.0
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.4e-11 71.6 62 54.8
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.4e-11 71.6 62 51.6
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 7.1e-11 71.2 64 53.1
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 1.2e-10 70.5 65 52.3
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 1.2e-10 70.5 68 50.0
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 1.2e-10 70.5 70 54.3
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.6e-10 70.1 72 50.0
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 3.5e-10 68.9 61 55.7
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 3.5e-10 68.9 65 50.8
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 3.5e-10 68.9 62 53.2
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 4.6e-10 68.6 65 52.3
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 4.6e-10 68.6 62 54.8
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 4.6e-10 68.6 62 53.2
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 6.0e-10 68.2 62 51.6
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 6.0e-10 68.2 65 49.2
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 6.0e-10 68.2 61 52.5
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.9e-10 67.8 62 50.0
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.0e-09 67.4 68 51.5
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.0e-09 67.4 65 50.8
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 1.3e-09 67.0 65 47.7
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 1.3e-09 67.0 62 51.6
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.8e-09 66.6 62 50.0
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 2.3e-09 66.2 65 52.3
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 2.3e-09 66.2 68 50.0
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 3.0e-09 65.9 64 48.4
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 3.0e-09 65.9 61 52.5
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 3.9e-09 65.5 64 51.6
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 5.1e-09 65.1 61 49.2
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.1e-08 63.9 65 49.2
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 2.5e-08 62.8 62 48.4
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 3.3e-08 62.4 67 44.8
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 4.3e-08 62.0 122 32.8
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 4.3e-08 62.0 62 50.0
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 4.3e-08 62.0 61 47.5
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 7.4e-08 61.2 62 50.0
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.6e-08 60.8 54 50.0
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 9.6e-08 60.8 62 51.6
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 1.6e-07 60.1 64 43.8
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.6e-07 60.1 61 45.9
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 2.1e-07 59.7 62 45.2
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 2.1e-07 59.7 62 48.4
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 2.1e-07 59.7 65 46.2
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 2.1e-07 59.7 62 48.4
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 2.1e-07 59.7 60 48.3
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 2.8e-07 59.3 62 48.4
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 3.7e-07 58.9 65 44.6
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 4.8e-07 58.5 122 30.3
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 4.8e-07 58.5 62 46.8
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 4.8e-07 58.5 62 46.8
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 4.8e-07 58.5 62 46.8
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 4.8e-07 58.5 62 51.6
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 6.2e-07 58.2 72 44.4
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 6.2e-07 58.2 62 46.8
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 6.2e-07 58.2 62 46.8
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 6.2e-07 58.2 64 43.8
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 8.1e-07 57.8 61 47.5
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 3.1e-06 55.8 64 45.3
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 4.0e-06 55.5 61 42.6
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.0e-06 54.3 61 41.0


User provided reference genes

Program Settings