Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N1CVZP Arachis hypogaea HOM05D002530 ORTHO05D002802 3.6e-32 141.0 71 100.0
arahy.Tifrunner.gnm1.ann1.8IGA7D Arachis hypogaea HOM05D002530 ORTHO05D002802 8.6e-10 66.6 32 100.0
arahy.Tifrunner.gnm1.ann1.ARQ4UL Arachis hypogaea HOM05D002530 ORTHO05D002802 8.6e-10 66.6 32 100.0
vmacro19867 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 3.3e-09 64.7 32 93.8
MSTRG.16493 Avicennia marina HOM05D002530 ORTHO05D002802 5.6e-09 63.9 32 90.6
ClCG11G013290 Citrullus lanatus HOM05D002530 ORTHO05D002802 5.6e-09 63.9 32 90.6
MELO3C011822.2 Cucumis melo HOM05D002530 ORTHO05D002802 5.6e-09 63.9 32 90.6
CsaV3_5G029810 Cucumis sativus L. HOM05D002530 ORTHO05D002802 5.6e-09 63.9 32 90.6
SGA_v2.0_scaffold304G47909 Striga asiatica HOM05D002530 ORTHO05D002802 5.6e-09 63.9 32 90.6
Cpa.g.c47972 Carica papaya HOM05D002530 ORTHO05D002802 7.3e-09 63.5 32 90.6
Cpa.g.sc113.52 Carica papaya HOM05D002530 ORTHO05D002802 7.3e-09 63.5 32 90.6
Ciclev10000208m.g Citrus clementina HOM05D002530 ORTHO05D002802 7.3e-09 63.5 32 90.6
Rhsim05G0120400 Rhododendron simsii HOM05D002530 ORTHO05D002802 9.5e-09 63.2 32 90.6
Atru.chr6.793 Acer truncatum HOM05D002530 ORTHO05D002802 1.2e-08 62.8 32 87.5
Oeu045925.1 Olea europaea HOM05D002530 ORTHO05D002802 1.2e-08 62.8 32 84.4
Sed0015896 Sechium edule HOM05D002530 ORTHO05D002802 1.2e-08 62.8 32 90.6
Thecc.02G019500 Theobroma cacao HOM05D002530 ORTHO05D002802 1.2e-08 62.8 32 90.6
CSS0005551 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
CSS0048271 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
COL.COLO4_26748 Corchorus olitorius HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
Gohir.A03G215200 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
Gohir.D02G236700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
Gorai.005G265200 Gossypium raimondii HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
Manes.07G023400 Manihot esculenta HOM05D002530 ORTHO05D002802 1.6e-08 62.4 32 90.6
Dinv19402 Davidia involucrata HOM05D002530 ORTHO05D002802 2.1e-08 62.0 32 90.6
Duzib052G0897 Durio zibethinus HOM05D002530 ORTHO05D002802 2.1e-08 62.0 32 90.6
FAN02G4569 Fragaria x ananassa HOM05D002530 ORTHO05D002802 2.1e-08 62.0 32 90.6
FAN05G3449 Fragaria x ananassa HOM05D002530 ORTHO05D002802 2.1e-08 62.0 32 90.6
FAN09G0211 Fragaria x ananassa HOM05D002530 ORTHO05D002802 2.1e-08 62.0 32 90.6
Zm00001eb146490 Zea mays HOM05D002530 ORTHO05D002802 2.8e-08 61.6 32 84.4
Actinidia06474 Actinidia chinensis HOM05D002530 ORTHO05D002802 3.6e-08 61.2 32 87.5
AL8G23930 Arabidopsis lyrata HOM05D002530 ORTHO05D002802 3.6e-08 61.2 32 87.5
AT5G49960 Arabidopsis thaliana HOM05D002530 ORTHO05D002802 3.6e-08 61.2 32 87.5
CARHR258750 Cardamine hirsuta HOM05D002530 ORTHO05D002802 3.6e-08 61.2 32 87.5
Haze_10049 Corylus avellana HOM05D002530 ORTHO05D002802 3.6e-08 61.2 51 60.8
QL02p100278 Quercus lobata HOM05D002530 ORTHO05D002802 3.6e-08 61.2 32 90.6
Glyma.12G167300 Glycine max HOM05D002530 ORTHO05D002802 4.7e-08 60.8 32 90.6
Glyma.16G003300 Glycine max HOM05D002530 ORTHO05D002802 4.7e-08 60.8 32 90.6
Phvul.006G218700 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 4.7e-08 60.8 32 90.6
Sc07g0004560 Simmondsia chinensis HOM05D002530 ORTHO05D002802 4.7e-08 60.8 32 90.6
VMungo0540G0429 Vigna mungo HOM05D002530 ORTHO05D002802 4.7e-08 60.8 32 90.6
Actinidia26167 Actinidia chinensis HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 84.4
BraA02t06341Z Brassica rapa HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 87.5
CANSAT54G0268 Cannabis sativa HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 81.2
Ca_00044_v3 Cicer arietinum L. HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 90.6
FvH4_6g26000 Fragaria vesca HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 87.5
Lj6g0022277 Lotus japonicus HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 90.6
Lalb_Chr18g0061051 Lupinus albus HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 90.6
Medtr2g005870 Medicago truncatula HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 90.6
Psat1g222280 Pisum sativum HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 90.6
TPR.G2132 Trifolium pratense HOM05D002530 ORTHO05D002802 6.2e-08 60.5 32 90.6
BcaB05g24061 Brassica carinata HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 84.4
BcaC03g14657 Brassica carinata HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 84.4
C02p20900 Brassica napus HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 84.4
BolC2t08233H Brassica oleracea HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 84.4
CSS0022709 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 8.1e-08 60.1 57 52.6
MD08G1240900 Malus domestica HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 87.5
Prupe.1G577700 Prunus persica HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 87.5
Sp6g11680 Schrenkiella parvula HOM05D002530 ORTHO05D002802 8.1e-08 60.1 32 84.4
Duzib132G0844 Durio zibethinus HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 84.4
Gohir.A02G007700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 87.5
Gohir.D02G007500 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 87.5
Gorai.005G009000 Gossypium raimondii HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 87.5
Hma1.2p1_1156F.1_g262320 Hydrangea macrophylla HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 84.4
Nn5g27864 Nelumbo nucifera HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 87.5
Os01g0870100 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 84.4
PGR142G2077 Punica granatum HOM05D002530 ORTHO05D002802 1.1e-07 59.7 56 55.4
PGR142G2696 Punica granatum HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 90.6
RcHm_v2.0_Chr7g0220721 Rosa chinensis HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 84.4
SMO347G0173 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 87.5
TWI23G0330 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 87.5
TAR628G1217 Trochodendron aralioides HOM05D002530 ORTHO05D002802 1.1e-07 59.7 32 84.4
A02p12850 Brassica napus HOM05D002530 ORTHO05D002802 1.4e-07 59.3 32 84.4
CiPaw.05G005400 Carya illinoinensis HOM05D002530 ORTHO05D002802 1.4e-07 59.3 31 90.3
Migut.B00779 Erythranthe guttata HOM05D002530 ORTHO05D002802 1.4e-07 59.3 32 81.2
ATR0743G261 Amborella trichopoda HOM05D002530 ORTHO05D002802 1.8e-07 58.9 32 84.4
GSVIVG01023259001 Vitis vinifera HOM05D002530 ORTHO05D002802 1.8e-07 58.9 32 84.4
ATR0584G164 Amborella trichopoda HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 84.4
ECA236G1516 Erigeron canadensis HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
HanXRQChr06g0181371 Helianthus annuus HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
Lsat_1_v5_gn_7_76001 Lactuca sativa HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
Lj6A232T33 Lonicera japonica HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
Lj6C228T6 Lonicera japonica HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
QL10p057078 Quercus lobata HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
THA.LOC104805001 Tarenaya hassleriana HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 81.2
TWI14G0172 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 2.4e-07 58.5 32 84.4
Aqoxy5G00355 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 3.1e-07 58.2 56 53.6
Carub.0008s0986 Capsella rubella HOM05D002530 ORTHO05D002802 3.1e-07 58.2 32 81.2
Migut.N03055 Erythranthe guttata HOM05D002530 ORTHO05D002802 3.1e-07 58.2 32 81.2
Migut.O00693 Erythranthe guttata HOM05D002530 ORTHO05D002802 3.1e-07 58.2 32 81.2
Eucgr.I02760 Eucalyptus grandis HOM05D002530 ORTHO05D002802 3.1e-07 58.2 32 84.4
ECA248G1279 Erigeron canadensis HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 81.2
HanXRQChr01g0023321 Helianthus annuus HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 81.2
Lsat_1_v5_gn_1_74180 Lactuca sativa HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 81.2
PSO170G2866 Papaver somniferum HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 81.2
SEGI_06022 Sequoiadendron giganteum HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 84.4
Solyc10g044900.3 Solanum lycopersicum HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 84.4
Sopen10g013890 Solanum pennellii HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 84.4
HPP92_017233 Vanilla planifolia HOM05D002530 ORTHO05D002802 4.0e-07 57.8 32 81.2
MD00G1064100 Malus domestica HOM05D002530 ORTHO05D002802 5.2e-07 57.4 32 84.4
DCAR_006675 Daucus carota HOM05D002530 ORTHO05D002802 6.8e-07 57.0 32 81.2
Lj5A262T66 Lonicera japonica HOM05D002530 ORTHO05D002802 6.8e-07 57.0 32 81.2
MBI07_g34960_MAGBIO Magnolia biondii HOM05D002530 ORTHO05D002802 6.8e-07 57.0 56 51.8
Manes.02G213500 Manihot esculenta HOM05D002530 ORTHO05D002802 6.8e-07 57.0 32 84.4
Potri.004G223400 Populus trichocarpa HOM05D002530 ORTHO05D002802 6.8e-07 57.0 32 81.2
Rhsim02G0085600 Rhododendron simsii HOM05D002530 ORTHO05D002802 6.8e-07 57.0 56 50.0
RhsimUnG0015100 Rhododendron simsii HOM05D002530 ORTHO05D002802 6.8e-07 57.0 56 50.0
Sopen03g013350 Solanum pennellii HOM05D002530 ORTHO05D002802 6.8e-07 57.0 35 74.3
TWI38G0533 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 6.8e-07 57.0 56 53.6
CSS0004772 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 8.9e-07 56.6 32 78.1
CSS0008293 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 8.9e-07 56.6 32 78.1
Os03g0843600 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 8.9e-07 56.6 32 84.4
Prupe.1G102500 Prunus persica HOM05D002530 ORTHO05D002802 8.9e-07 56.6 32 81.2
TAR633G1377 Trochodendron aralioides HOM05D002530 ORTHO05D002802 8.9e-07 56.6 32 81.2
TAR633G2324 Trochodendron aralioides HOM05D002530 ORTHO05D002802 8.9e-07 56.6 32 81.2
Actinidia11439 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 78.1
Aqoxy6G00138 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 84.4
CAN.G196.3 Capsicum annuum HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 81.2
Ciclev10018782m.g Citrus clementina HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 81.2
Cc02_g23070 Coffea canephora HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 75.0
Nitab4.5_0000667g0080 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 81.2
Sabra03G0004400 Salix brachista HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 81.2
PGSC0003DMG400015945 Solanum tuberosum HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 81.2
Zm00001eb210900 Zea mays HOM05D002530 ORTHO05D002802 1.2e-06 56.2 32 84.4
Haze_00855 Corylus avellana HOM05D002530 ORTHO05D002802 1.5e-06 55.8 32 81.2
Lj1g0001992 Lotus japonicus HOM05D002530 ORTHO05D002802 1.5e-06 55.8 32 81.2
Peaxi162Scf00883g00321 Petunia axillaris HOM05D002530 ORTHO05D002802 1.5e-06 55.8 32 81.2
Potri.003G008800 Populus trichocarpa HOM05D002530 ORTHO05D002802 1.5e-06 55.8 32 78.1
Cc03_g14450 Coffea canephora HOM05D002530 ORTHO05D002802 2.0e-06 55.5 32 81.2
Mapoly0173s0003 Marchantia polymorpha HOM05D002530 ORTHO05D002802 2.0e-06 55.5 28 89.3
QL02p100314 Quercus lobata HOM05D002530 ORTHO05D002802 2.0e-06 55.5 32 81.2
SalBow6G6351 Salvia bowleyana HOM05D002530 ORTHO05D002802 2.0e-06 55.5 32 78.1
PGSC0003DMG400008528 Solanum tuberosum HOM05D002530 ORTHO05D002802 2.0e-06 55.5 32 81.2
GSVIVG01038181001 Vitis vinifera HOM05D002530 ORTHO05D002802 2.0e-06 55.5 32 78.1
arahy.Tifrunner.gnm1.ann1.PUPF9M Arachis hypogaea HOM05D002530 ORTHO05D002802 2.6e-06 55.1 34 76.5
arahy.Tifrunner.gnm1.ann1.XB6ANN Arachis hypogaea HOM05D002530 ORTHO05D002802 2.6e-06 55.1 34 76.5
CiPaw.01G169300 Carya illinoinensis HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 78.1
ClCG11G013480 Citrullus lanatus HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 81.2
MELO3C011849.2 Cucumis melo HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 81.2
CsaV3_5G030100 Cucumis sativus L. HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 81.2
Duzib268G0824 Durio zibethinus HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 78.1
PSO063G5596 Papaver somniferum HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 81.2
PSO782G3741 Papaver somniferum HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 81.2
Potri.013G128100 Populus trichocarpa HOM05D002530 ORTHO05D002802 2.6e-06 55.1 56 50.0
Sed0015965 Sechium edule HOM05D002530 ORTHO05D002802 2.6e-06 55.1 32 81.2
Eucgr.H00287 Eucalyptus grandis HOM05D002530 ORTHO05D002802 3.4e-06 54.7 32 78.1
Glyma.19G263500 Glycine max HOM05D002530 ORTHO05D002802 3.4e-06 54.7 32 78.1
Lalb_Chr15g0076801 Lupinus albus HOM05D002530 ORTHO05D002802 3.4e-06 54.7 32 78.1
MBI07_g33480_MAGBIO Magnolia biondii HOM05D002530 ORTHO05D002802 3.4e-06 54.7 32 78.1
SEGI_10081 Sequoiadendron giganteum HOM05D002530 ORTHO05D002802 3.4e-06 54.7 32 81.2
HPP92_001253 Vanilla planifolia HOM05D002530 ORTHO05D002802 3.4e-06 54.7 32 81.2
Nitab4.5_0000064g0010 Nicotiana tabacum HOM05D002530 ORTHO05D002802 4.4e-06 54.3 31 83.9
Psat3g000200 Pisum sativum HOM05D002530 ORTHO05D002802 4.4e-06 54.3 32 78.1
Potri.019G097000 Populus trichocarpa HOM05D002530 ORTHO05D002802 4.4e-06 54.3 32 78.1
RcHm_v2.0_Chr4g0405621 Rosa chinensis HOM05D002530 ORTHO05D002802 4.4e-06 54.3 32 78.1
HPP92_003582 Vanilla planifolia HOM05D002530 ORTHO05D002802 4.4e-06 54.3 32 81.2
Zm00001eb123920 Zea mays HOM05D002530 ORTHO05D002802 4.4e-06 54.3 32 81.2
CANSAT56G0720 Cannabis sativa HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
DCAR_028970 Daucus carota HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
FAN07G1477 Fragaria x ananassa HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
Oeu024468.1 Olea europaea HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
PSO407G0206 Papaver somniferum HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
Peaxi162Scf00002g02319 Petunia axillaris HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
QL03p014525 Quercus lobata HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 75.0
SMO351G0438 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 78.1
vmacro15696 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 5.8e-06 53.9 32 75.0
EL10Ac6g14174 Beta vulgaris HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
CAN.G1669.1 Capsicum annuum HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 78.1
CAN.G1891.13 Capsicum annuum HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 78.1
Dinv33216 Davidia involucrata HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
FvH4_4g10120 Fragaria vesca HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
FAN12G0122 Fragaria x ananassa HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
FAN12G0621 Fragaria x ananassa HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
FAN17G1116 Fragaria x ananassa HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
Medtr7g117580 Medicago truncatula HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 78.1
Phvul.009G263100 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
VMungo1309G0121 Vigna mungo HOM05D002530 ORTHO05D002802 7.6e-06 53.5 32 75.0
Thecc.04G163700 Theobroma cacao HOM05D002530 ORTHO05D002802 9.9e-06 53.1 32 78.1


User provided reference genes

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